View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_140 (Length: 244)
Name: NF16561_low_140
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3432057 - 3431835
Alignment:
| Q |
1 |
ttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgttgaatatattaaatca |
100 |
Q |
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| T |
3432057 |
ttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatat----gtagcgttgaatatattaaatca |
3431962 |
T |
|
| Q |
101 |
taccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgatggttgtgtactagagctcgtatcaagtagcgaagcgaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
3431961 |
taccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgagggttgtgtactagaactcgtatcaagtagcgaagcgaatta |
3431862 |
T |
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| Q |
201 |
cgaaccaattactgactatgttcttgc |
227 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
3431861 |
cgaaccaattattgactatgttcttgc |
3431835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 11913442 - 11913643
Alignment:
| Q |
1 |
ttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgttgaatatattaaatca |
100 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | || |||| |||||||||||||| |
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| T |
11913442 |
ttgtatttatattgattatttca---gtgtaaatatggctttacatttgtataatttaaaaacatattcata---aggtgccgtttaatatattaaatca |
11913535 |
T |
|
| Q |
101 |
taccatgaattaaaatagtgtatcgactatatg----tactccttcgtacctaat---actttgatggttgtgtactagagctcgtatcaagtagcgaag |
193 |
Q |
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|||||| | || |||||||| |||||||||||| ||||||||| |||||||| ||||||| ||||||||| |||||||||||||||| | ||||| |
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| T |
11913536 |
taccataatttgaaatagtgcatcgactatatgcatgtactccttcatacctaataatactttgagggttgtgtaatagagctcgtatcaaggaacgaag |
11913635 |
T |
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| Q |
194 |
cgaattac |
201 |
Q |
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|||||||| |
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| T |
11913636 |
cgaattac |
11913643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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