View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_142 (Length: 241)
Name: NF16561_low_142
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_142 |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: scaffold0475 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12035 - 11802
Alignment:
| Q |
1 |
atgtaatcacatgcgtctgtgttgatgttggacaccttccattagaagtgtaggtgtta------tatagcttctcatgataagtgtcggtgttacagag |
94 |
Q |
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| T |
12035 |
atgtaatcacatgtgtctgtgttgatgttggacaccttccattagaagtgtaggtgttaatgttatagagcttctcatgataaggttcggtgttacagag |
11936 |
T |
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| Q |
95 |
cttatcatgataagtgtccgtgtttcagagcttatcttgataagcggttatgtataacttattcctttgacaaaag-ataaaatt-aagttaaannnnnn |
192 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
11935 |
cttgtcatgataagtgtcggtgtttcagagcttatcttgataagcggttatgtataacttattcctttgacaaaagaataaaattaaagttaaattgttt |
11836 |
T |
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| Q |
193 |
ncgtataagctataagttgtttcatttatctgtg |
226 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11835 |
tcgtataagctataagttgtttcatttatctgtg |
11802 |
T |
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