View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_145 (Length: 238)
Name: NF16561_low_145
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_145 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50914771 - 50914990
Alignment:
| Q |
1 |
taacaaaacgcctataaataagagaaatacaattcataccagtctcacaaacaaatttctaattnnnnnnnnnnttagagttagcgatttcacacctttc |
100 |
Q |
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| T |
50914771 |
taacaaaacgcctataaataagagaaatacaattcataccagtctcacaaacaaatttttaattaaaaaaaaa-ttagagttagcgatttcacacctttc |
50914869 |
T |
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| Q |
101 |
ccccaaacacgatcacgatgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatc |
200 |
Q |
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| T |
50914870 |
ccccaaacacgatcacgatgtcttcatacaccaagaagatcactctcaacagttccgacggcgaaaccttcaaagtttccaagatggtggcacgtgaatc |
50914969 |
T |
|
| Q |
201 |
gcaggtgatcaagcatatgat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
50914970 |
gcaggtgatcaagcatatgat |
50914990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 37481085 - 37480990
Alignment:
| Q |
118 |
atgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaag |
213 |
Q |
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| T |
37481085 |
atgtcttcaaccaccaagaagatcactctcaagagttccgacaacgaaacctttgaggttcccgaggcggtggcacttgaatcgcagacgatcaag |
37480990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 6774068 - 6774120
Alignment:
| Q |
118 |
atgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaacctt |
170 |
Q |
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| T |
6774068 |
atgtcttcaaccaccaagaagatcactctcaagagttccgacaacgaaacctt |
6774120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 6778355 - 6778458
Alignment:
| Q |
118 |
atgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaagcata |
217 |
Q |
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||||||||| |||||||||||| |||||||| |||||||||| ||||||||| | ||| || || ||||||| |||||||||| ||||||||| | |
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| T |
6778355 |
atgtcttcaaccaccaagaagatgactctcaagagttccgacaacgaaacctttgaggttcccgaggctgtggcacttgaatcgcagacgatcaagcaca |
6778454 |
T |
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| Q |
218 |
tgat |
221 |
Q |
| |
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|||| |
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| T |
6778455 |
tgat |
6778458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 37476563 - 37476460
Alignment:
| Q |
118 |
atgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaagcata |
217 |
Q |
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||||||||| || |||||||||||||||||| |||||||||| ||||||||| | ||| || || ||||||| |||||||||| ||||||||| | |
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| T |
37476563 |
atgtcttcaaccagcaagaagatcactctcaagagttccgacaacgaaacctttgaggttcccgaggctgtggcacttgaatcgcagacgatcaagcaca |
37476464 |
T |
|
| Q |
218 |
tgat |
221 |
Q |
| |
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|||| |
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|
| T |
37476463 |
tgat |
37476460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 37557349 - 37557418
Alignment:
| Q |
110 |
cgatcacgatgtcttcatacaccaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttc |
179 |
Q |
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| T |
37557349 |
cgatcaccatgtcttcaacaaccaagaagatcactctgaagagttccgactgcaaaagcttcgaagtttc |
37557418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 37580548 - 37580636
Alignment:
| Q |
133 |
aagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaagcatatgat |
221 |
Q |
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|||| ||||||||| || |||| ||||||| |||||||| | |||||| || |||||||| |||||| || ||||||||||||||| |
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| T |
37580548 |
aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacatgaatcacacacgatcaagcatatgat |
37580636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 37363203 - 37363112
Alignment:
| Q |
130 |
accaagaagatcactctcaacagttccgacagcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaagcatatgat |
221 |
Q |
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||||||||||||||||| || ||||||||| ||||||||||| | ||||| || |||||| | ||||||| || ||||||||| ||||| |
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| T |
37363203 |
accaagaagatcactctaaagagttccgacggcgaaaccttcgaggtttctgaggcggtggcgcttgaatcgtagacgatcaagcacatgat |
37363112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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