View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_146 (Length: 238)
Name: NF16561_low_146
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_146 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 31969408 - 31969623
Alignment:
| Q |
18 |
agagcttatgtccctaagccgtttttcgcttattttataagctctcaaagacaatttctatttattgcctctttttaaattgaaatgtttaaaaaatgtt |
117 |
Q |
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| T |
31969408 |
agagcttatgttcctaagccgtttttcgcttattttataagctctcaaagacaatttctatttattgcctctttttaaattgaaatgtttaaaaaatgtt |
31969507 |
T |
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| Q |
118 |
atccttgacaaatatatttgctctcatagacggcttatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaat |
217 |
Q |
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| T |
31969508 |
atccttgacgaatatatttgctctcaaagacggcgtatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaat |
31969607 |
T |
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| Q |
218 |
taagttgtttatcaaa |
233 |
Q |
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| T |
31969608 |
taagttgtttatcaaa |
31969623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 31968090 - 31968173
Alignment:
| Q |
150 |
gcttatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaattaagttgtttatcaaa |
233 |
Q |
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| T |
31968090 |
gcttatgaaaatagtttgactttattttattttctattgtaggaatagtttatacaaaaccacttaattaagttgtttatcaaa |
31968173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 31964668 - 31964752
Alignment:
| Q |
150 |
gcttatgaaaatagttt-gattttattttatcatttattttgtaaatagtttataaataaccacttaattaagttgtttatcaaa |
233 |
Q |
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| T |
31964668 |
gcttatgaaaacagttttgactttattttatcttttattgtaggaatagtttatacaaaaccacttaattaagtcgtttatcaaa |
31964752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 31420948 - 31420890
Alignment:
| Q |
157 |
aaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccactta |
215 |
Q |
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| T |
31420948 |
aaaatagtttgattttattttaccatttattatagaaatagcttataaataaacactta |
31420890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 12224975 - 12225052
Alignment:
| Q |
153 |
tatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaattaagttgtttatc |
230 |
Q |
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| T |
12224975 |
tatgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatc |
12225052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 20192682 - 20192759
Alignment:
| Q |
153 |
tatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaattaagttgtttatc |
230 |
Q |
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| T |
20192682 |
tatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcacttaattgagctgtttatc |
20192759 |
T |
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