View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_147 (Length: 238)

Name: NF16561_low_147
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_147
NF16561_low_147
[»] chr3 (4 HSPs)
chr3 (1-154)||(1723351-1723504)
chr3 (164-224)||(1723254-1723314)
chr3 (1-96)||(45250281-45250376)
chr3 (169-224)||(27647889-27647944)
[»] chr6 (3 HSPs)
chr6 (169-225)||(16118571-16118627)
chr6 (169-224)||(32056526-32056579)
chr6 (169-206)||(10457923-10457960)
[»] chr4 (4 HSPs)
chr4 (169-224)||(41982646-41982701)
chr4 (176-224)||(30783556-30783604)
chr4 (169-224)||(32838985-32839040)
chr4 (180-224)||(46867580-46867624)
[»] chr8 (4 HSPs)
chr8 (1-94)||(1663048-1663141)
chr8 (176-224)||(7000778-7000826)
chr8 (178-224)||(7000997-7001043)
chr8 (1-38)||(1746810-1746847)
[»] chr2 (3 HSPs)
chr2 (179-224)||(9730640-9730685)
chr2 (176-217)||(26511071-26511112)
chr2 (179-224)||(14815413-14815458)
[»] chr7 (2 HSPs)
chr7 (169-218)||(30332449-30332498)
chr7 (175-224)||(47304119-47304168)
[»] scaffold0426 (1 HSPs)
scaffold0426 (181-224)||(3548-3591)
[»] chr5 (3 HSPs)
chr5 (169-224)||(8588951-8589006)
chr5 (179-224)||(19831805-19831850)
chr5 (164-224)||(14062437-14062497)
[»] scaffold0049 (1 HSPs)
scaffold0049 (175-211)||(62885-62921)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1723504 - 1723351
Alignment:
Q  1 cactttctttaatgccactatcttccttgtaaccaagtatttagcgctatacacattactatatgtcccttgcccaatatgaactaatcgaacacaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  1723504 cactttctttaatgccactatcttccttgtaaccaagtatttagcgctataaacattactatatgtcccttgcccaatatgaactaatcgaacacaaata 1723405  T
Q  101 caccactaagttatttacaaagtttgaaactaaaccaagtttatctacatctac 154  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  1723404 caccactaagttatttacaaagtttgaaactaaaccaagtttttctaaatctac 1723351  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 1723314 - 1723254
Alignment:
Q  164 aattaaaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1723314 aattaaaacatattattttagtttttagcatttatttgacagtatcaaggatcaatttgat 1723254  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 45250281 - 45250376
Alignment:
Q  1 cactttctttaatgccactatcttccttgtaaccaagtatttagcgctatacacattactatatgtcccttgcccaatatgaactaatcgaacaca 96  Q
    |||||| || ||||| |||||||||| ||||||||||| ||| ||  ||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  45250281 cacttttttcaatgctactatcttccctgtaaccaagtcttttgctttatacacattactatatgtcccttgcccaatctgaacaaatcaaacaca 45250376  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 27647889 - 27647944
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||||    
T  27647889 aaacatattctttttatttttagcatttatttgacaatattaagtatcaatttgat 27647944  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 16118571 - 16118627
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgatg 225  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  16118571 aaacatattcttttagtttttgacatttatttgacagtatcaaggatcgatttgatg 16118627  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 32056526 - 32056579
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||| |||||||||||||||||||||||||||  |||||||  ||||||||||||    
T  32056526 aaacacattcttttagtttttagcatttatttg--agtatcagagatcaatttgat 32056579  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 10457923 - 10457960
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagt 206  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  10457923 aaacacattcttttagtttttaacatttatttgacagt 10457960  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 41982646 - 41982701
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  41982646 aaacatgttcttttagtttttagcatttatttgacagtatcagagatcaatttgat 41982701  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 30783604 - 30783556
Alignment:
Q  176 ttcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  30783604 ttcttttagtttttaacatttatttgacagtatcatggatcaaattgat 30783556  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 32838985 - 32839040
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||| ||||||| | ||||||||||||||||||| |||||| |||||||||||||    
T  32838985 aaacacattctttcaatttttagcatttatttgacggtatcatggatcaatttgat 32839040  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 46867624 - 46867580
Alignment:
Q  180 tttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||| |||||| ||||||||||| ||||||||||||||| |||||    
T  46867624 tttaatttttaacatttatttgatagtatcaaggatcaaattgat 46867580  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1663141 - 1663048
Alignment:
Q  1 cactttctttaatgccactatcttccttgtaaccaagtatttagcgctatacacattactatatgtcccttgcccaatatgaactaatcgaaca 94  Q
    ||||||||| |||||||||||||||| | ||||||||| ||||||  ||||||||||||||||| ||| || |||| | ||||| |||| ||||    
T  1663141 cactttcttcaatgccactatcttccctataaccaagtctttagctttatacacattactatatatccatttcccagtctgaacaaatcaaaca 1663048  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 7000826 - 7000778
Alignment:
Q  176 ttcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||||||||||||||||||||||||| ||||||  |||||| |||||    
T  7000826 ttcttttagtttttagcatttatttgacggtatcagagatcaaattgat 7000778  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 7000997 - 7001043
Alignment:
Q  178 cttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||||| |||| ||||||||||||| ||||||||||||| |||||    
T  7000997 cttttagtgtttaacatttatttgacaatatcaaggatcaaattgat 7001043  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1746847 - 1746810
Alignment:
Q  1 cactttctttaatgccactatcttccttgtaaccaagt 38  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  1746847 cactttcttcaatgccactatcttccctgtaaccaagt 1746810  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 9730685 - 9730640
Alignment:
Q  179 ttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  9730685 ttttaggttttagcatttatttgacaatatcaaggatcaatttgat 9730640  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 26511112 - 26511071
Alignment:
Q  176 ttcttttagtttttagcatttatttgacagtatcaaggatca 217  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  26511112 ttcttttagtttttagtatttatttgacagcatcaaggatca 26511071  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 14815458 - 14815413
Alignment:
Q  179 ttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||| ||||||||||||||||||| |||||||||| | ||||||    
T  14815458 ttttagcttttagcatttatttgacattatcaaggattagtttgat 14815413  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 30332498 - 30332449
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaa 218  Q
    ||||| ||||||| |||||||| |||||||||||||||||||| ||||||    
T  30332498 aaacacattctttcagtttttaacatttatttgacagtatcaatgatcaa 30332449  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 47304119 - 47304168
Alignment:
Q  175 attcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||||||||||||||| || |||||||| ||||||||||| || |||||    
T  47304119 attcttttagtttttaggatatatttgacggtatcaaggattaaattgat 47304168  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 3591 - 3548
Alignment:
Q  181 ttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||||||| |||||||||||||||||||| |||||| |||||    
T  3591 ttagtttttaccatttatttgacagtatcaatgatcaaattgat 3548  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 8589006 - 8588951
Alignment:
Q  169 aaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    ||||| ||||||| || |||||| |||||||||| | |||||||||||||||||||    
T  8589006 aaacacattctttcagattttagaatttatttgatactatcaaggatcaatttgat 8588951  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 19831805 - 19831850
Alignment:
Q  179 ttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||    
T  19831805 ttttagtttttagcatttatttgacaatatcagagatcagtttgat 19831850  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 14062497 - 14062437
Alignment:
Q  164 aattaaaacatattcttttagtttttagcatttatttgacagtatcaaggatcaatttgat 224  Q
    |||| ||||| ||||||| |  |||| ||||||||||||| ||||| ||||||||||||||    
T  14062497 aatttaaacacattctttcacatttttgcatttatttgacggtatctaggatcaatttgat 14062437  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 62885 - 62921
Alignment:
Q  175 attcttttagtttttagcatttatttgacagtatcaa 211  Q
    |||||||||||||||| |||||||||||| |||||||    
T  62885 attcttttagtttttaacatttatttgacggtatcaa 62921  T

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