View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_149 (Length: 236)
Name: NF16561_low_149
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6457743 - 6457963
Alignment:
| Q |
1 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaagttgaagatgaactg |
100 |
Q |
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| T |
6457743 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaagttgaagatgaactg |
6457842 |
T |
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| Q |
101 |
gatgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatttgtgaatgctgcatcaccagaagtagggtaaca |
200 |
Q |
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| T |
6457843 |
gatgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatttgtgaatgctgcatcaccagaagtagggtaaca |
6457942 |
T |
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| Q |
201 |
agaactgaaccggttaaggat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6457943 |
agaactgaaccggttaaggat |
6457963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 6505850 - 6505946
Alignment:
| Q |
1 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaagttgaagatgaa |
97 |
Q |
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| T |
6505850 |
ccaacaacaccaacaaggtcaccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactctcactttttgacagaagttgaagatgaa |
6505946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6515912 - 6515816
Alignment:
| Q |
1 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaagttgaagatgaa |
97 |
Q |
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| T |
6515912 |
ccaacaacaccaacaaggtctccatcaatgctttgatacttgaaatcatccaaaacagttacatcacttttacttttagataaaagttgaatatgaa |
6515816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6461632 - 6461584
Alignment:
| Q |
1 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcat |
49 |
Q |
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||||||||||||||||| || || ||||||||||||||||| ||||||| |
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| T |
6461632 |
ccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatcat |
6461584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6497040 - 6497088
Alignment:
| Q |
1 |
ccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcat |
49 |
Q |
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||||||||||||||||| || || ||||||||||||||||| ||||||| |
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| T |
6497040 |
ccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatcat |
6497088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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