View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_154 (Length: 227)

Name: NF16561_low_154
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_154
NF16561_low_154
[»] chr3 (4 HSPs)
chr3 (67-227)||(50914587-50914748)
chr3 (136-225)||(52653553-52653641)
chr3 (160-225)||(33709602-33709668)
chr3 (182-227)||(2257449-2257494)
[»] chr5 (2 HSPs)
chr5 (136-227)||(36202893-36202983)
chr5 (129-227)||(11043017-11043114)
[»] chr8 (2 HSPs)
chr8 (130-225)||(12729170-12729264)
chr8 (129-226)||(28696326-28696422)
[»] chr7 (3 HSPs)
chr7 (131-225)||(12239867-12239960)
chr7 (145-227)||(34091726-34091807)
chr7 (129-224)||(24533186-24533281)
[»] chr6 (1 HSPs)
chr6 (131-217)||(28612390-28612475)
[»] chr4 (8 HSPs)
chr4 (131-225)||(24129587-24129680)
chr4 (129-225)||(1495015-1495110)
chr4 (146-225)||(20251176-20251255)
chr4 (161-227)||(122856-122922)
chr4 (146-225)||(48780120-48780198)
chr4 (129-221)||(1516574-1516664)
chr4 (178-225)||(1533134-1533180)
chr4 (19-69)||(48779989-48780038)
[»] chr2 (1 HSPs)
chr2 (130-222)||(34681343-34681434)
[»] scaffold0007 (2 HSPs)
scaffold0007 (161-226)||(217538-217603)
scaffold0007 (165-225)||(215670-215730)
[»] chr1 (1 HSPs)
chr1 (182-225)||(49053584-49053627)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 50914587 - 50914748
Alignment:
Q  67 atttttctgcaaagtgcctttattcatggagaaaccttatgtccctttagtgaagnnnnnnn-cctttggaagagtttgtttcatgaatggttgcattgc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  50914587 atttttctgcaaagtgcctttattcatggagaaaccttatgtccctttagtgaagagaaaaaacctttggaagagtttgtttcatgaatggttgcattgc 50914686  T
Q  166 ttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50914687 ttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 50914748  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 52653641 - 52653553
Alignment:
Q  136 aagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||||| ||||||||||| |||||| ||||||||||| || ||||||||| | ||||||||| | ||||||| ||||||||||||    
T  52653641 aagagtttgtt-catgaatggttacattgcatcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaacttt 52653553  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 33709668 - 33709602
Alignment:
Q  160 cattgcttcaattgtcaagcattacacc--tttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||||||||| ||||||||||||  |||  | |||||||||||| ||||||||||||||||||    
T  33709668 cattgcttcaattgtaaagcattacaccttttttttataaaaggtctct-tttaaccattgcaacttt 33709602  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 2257449 - 2257494
Alignment:
Q  182 tacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||||||    
T  2257449 tacatcttttctctaaatggtctctatttaagcattgcaacttttc 2257494  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 36202983 - 36202893
Alignment:
Q  136 aagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  36202983 aagagtttgtt-catgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttc 36202893  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 11043017 - 11043114
Alignment:
Q  129 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    |||||| ||||||||||| ||||||||| |  |||| || ||| | ||| |||||||||||| ||||||||| ||| |||||||||  || ||||||||    
T  11043017 cctttgaaagagtttgtt-catgaatggctagattgattaaatggacaaacattacaccttttctctaaaagatctttatttaaccgatgaaacttttc 11043114  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 12729264 - 12729170
Alignment:
Q  130 ctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    |||| |||||||||| | |||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12729264 ctttagaagagtttgct-catgaatggttatattgcttcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaacttt 12729170  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 28696326 - 28696422
Alignment:
Q  129 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaactttt 226  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  28696326 cctttagaagagtttgtt-catgaatggttacattgcttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttt 28696422  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 12239867 - 12239960
Alignment:
Q  131 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||||||| ||||| ||| | ||||||||||| | ||||||||||||||||||    
T  12239867 tttgaaagagtttgtt-catgaatggttacattgcatcaattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgcaacttt 12239960  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 34091726 - 34091807
Alignment:
Q  145 tttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    ||||||||||| || || | |||||||| |||| |||||||| |||  | |||||||||| ||||||||||||| ||||||||    
T  34091726 tttcatgaatgattacactacttcaattatcaaacattacacatttttt-taaaaggtctttatttaaccattgtaacttttc 34091807  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 24533281 - 24533186
Alignment:
Q  129 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactct-aaaaggtctctatttaaccattgcaactt 224  Q
    |||||| ||| ||||||| ||||||||||| ||||||| ||||||| || |||||||  ||| |||| ||||  ||||||||||||||  |||||||    
T  24533281 cctttgaaagtgtttgtt-catgaatggttacattgctacaattgttaaacattacatattttctctaaaaaaatctctatttaaccaccgcaactt 24533186  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 28612390 - 28612475
Alignment:
Q  131 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccatt 217  Q
    |||||||||||||||| ||||||| |||  ||||||||||||||||| || ||||||||| |||||||||| |||||||||||||||    
T  28612390 tttggaagagtttgtt-catgaattgttatattgcttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccatt 28612475  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 24129587 - 24129680
Alignment:
Q  131 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||||| ||| |||| | || |||||||||||||| |||||    
T  24129587 tttggaagagtttgtt-catgaatggttacattgcttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgacttt 24129680  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 1495015 - 1495110
Alignment:
Q  129 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    |||||| |||| |||  |||||||||||||  |||||||||| ||| |||| |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  1495015 cctttgaaagaattttgttcatgaatggttatattgcttcaactgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaacttt 1495110  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 20251255 - 20251176
Alignment:
Q  146 ttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||| ||| ||||| ||||||| |||| || ||||| ||| ||||||||| |||||||||||| |||||||||||    
T  20251255 ttcatgaatagttacattgtttcaattatcaaacaatacactttttctctaaaagatctctatttaacaattgcaacttt 20251176  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 122922 - 122856
Alignment:
Q  161 attgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttc 227  Q
    |||| ||||||||||||||| ||||| ||| |||||||| || |||||||||| |||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttc 122856  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 48780120 - 48780198
Alignment:
Q  146 ttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||| |||  ||||||||||||||||| ||||| |||||| ||||||||| ||| | ||||| ||||||||||||    
T  48780120 ttcatgaatagttatattgcttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaacttt 48780198  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 1516574 - 1516664
Alignment:
Q  129 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaa 221  Q
    |||||| |||| |||||| |||||||||||  ||||| ||| || | ||||| ||||||||| |||||||| |||||| ||||||||||||||    
T  1516574 cctttgaaagattttgtt-catgaatggttatattgcgtcatttctaaagcactacaccttttctctaaaatgtctct-tttaaccattgcaa 1516664  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  178 gcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctct-tttaaccattgcaacttt 1533180  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 48779989 - 48780038
Alignment:
Q  19 agaatttagactgccaagaattttgatgttctatctctttttctttcaatt 69  Q
    |||||||||| || ||||||| | |||||||||||||||||||||||||||    
T  48779989 agaatttagaatgacaagaatgt-gatgttctatctctttttctttcaatt 48780038  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 34681343 - 34681434
Alignment:
Q  130 ctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaac 222  Q
    |||| |||||||||||| ||| ||||||  |||||||||||||||||| |||||||| ||| ||||||||||| | | |||||||||||||||    
T  34681343 cttttgaagagtttgtt-catcaatggtaacattgcttcaattgtcaaacattacactttttctctaaaaggtttatgtttaaccattgcaac 34681434  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 217603 - 217538
Alignment:
Q  161 attgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaactttt 226  Q
    |||||||  ||||||||| ||||| | ||| ||||||||| |||||||||||||||||||||||||    
T  217603 attgctttgattgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaactttt 217538  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 215730 - 215670
Alignment:
Q  165 cttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||| ||||| |||||||  ||| ||  ||||| ||||||||||||||||||||||||    
T  215730 cttcaatcgtcaaacattacatattttcttcaaaagatctctatttaaccattgcaacttt 215670  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 49053627 - 49053584
Alignment:
Q  182 tacacctttactctaaaaggtctctatttaaccattgcaacttt 225  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaacttt 49053584  T

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