View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_157 (Length: 220)
Name: NF16561_low_157
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_157 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 46260548 - 46260734
Alignment:
| Q |
18 |
aactccagggattgagattatcgcaattatcgaggatttcttggttgaagaatttcggtaaatcataaacgaaaattctaccggagctgcactcatcgtt |
117 |
Q |
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| T |
46260548 |
aactccagggattgagattatcgcaattatctaggatttcttggttgaagaatttcggtaaatcataaacgaaaattctaccggagctgcactcatcgct |
46260647 |
T |
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| Q |
118 |
gtttatagtgggaatagaatccaatacagtgtagttttgaattcttcttccaccatcaactacggcgagacgagtggggaagttgtg |
204 |
Q |
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| T |
46260648 |
gtttatagtgggaatagaatccaatacagtgtagttttgaattcttcttccaccatcaactacggcgagacgagtggggaagttgtg |
46260734 |
T |
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