View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_158 (Length: 220)
Name: NF16561_low_158
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_158 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3675397 - 3675611
Alignment:
| Q |
1 |
caaaagcctgtgttcatcttcacaacaatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaa |
100 |
Q |
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| T |
3675397 |
caaaagcctgtgttcatcttcaaaacaatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaa |
3675496 |
T |
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| Q |
101 |
atatgttccaaacaacannnnnnnnnnnnnnnnnnnnnccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcgg |
200 |
Q |
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| T |
3675497 |
atatgttcaaaacaaca-tttttttagatatattttttccacaaaaattgtggtattttgtcatggaaaaaagtaatct--tagcatatgtttggttcgg |
3675593 |
T |
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| Q |
201 |
caatgaaattcataaaat |
218 |
Q |
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|||||||||||||||||| |
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| T |
3675594 |
caatgaaattcataaaat |
3675611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 48553403 - 48553314
Alignment:
| Q |
1 |
caaaagcctgtgttcatcttcacaacaatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta |
90 |
Q |
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| T |
48553403 |
caaaagcctctgctcttcctcacaacagtatccaattaacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta |
48553314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51938969 - 51939043
Alignment:
| Q |
1 |
caaaagcctgtgttcatcttcacaacaatatccaattaacttcacaagatgtggatgacttagttgtccaagaaa |
75 |
Q |
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|||||| || ||||| |||||||| ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| |
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| T |
51938969 |
caaaagtctatgttcttcttcacagcaatatccaatcaacttcacaaggtgttgatgtcttagttgaccaagaaa |
51939043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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