View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_16 (Length: 558)
Name: NF16561_low_16
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 206 - 543
Target Start/End: Complemental strand, 35051502 - 35051165
Alignment:
| Q |
206 |
gtttctactacattcattaacagtacaagctgtagattccaattgccatcctaacatgtaaaatgtagtttcttaatcacttaacactataaatttaaat |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051502 |
gtttctactacattcaataacagtacaagctgtagattccaattgccatcctaacatgtaaaatgtagtttcttaatcacttaacactataaatttaaat |
35051403 |
T |
|
| Q |
306 |
agtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtcctcattctgatggtttatcaaccatatggtgttg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35051402 |
agtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtcctcattctgatggtttatcaatcatatggtgttg |
35051303 |
T |
|
| Q |
406 |
tgcctacaaaaaacacataaatgtaagaattggtgatttatattaaaacttgactagatcactaacagaaagaaaagaaggaaccgatacctctaaaagt |
505 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051302 |
tgcctacaaaaaacacataaatgtaagaattgctgatttatattaaaacttgactagatcactaacagaaagaaaagaaggaaccgatacctctaaaagt |
35051203 |
T |
|
| Q |
506 |
tctgaacatgtaatattatgatttatgctttgagaata |
543 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35051202 |
tctgaacatgtaatattatgatttatgctttgagaata |
35051165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 35051686 - 35051564
Alignment:
| Q |
22 |
acataacacaatcaagagcctcatcacatagtaaaaaacatgtccactcaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtgggac |
121 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051686 |
acataacacaatcaagagcctcatcacaaagtaacaaacatgtccactcaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtgggac |
35051587 |
T |
|
| Q |
122 |
tgaagctaaattgtttcaacacc |
144 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35051586 |
tgaagctaaattgtttcaacacc |
35051564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35051733 - 35051704
Alignment:
| Q |
1 |
ctgctaaagtatataacaaatacataacac |
30 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
35051733 |
ctgctaaagtatataacaaatacataacac |
35051704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 215 - 545
Target Start/End: Original strand, 53324127 - 53324463
Alignment:
| Q |
215 |
acattcattaacagtacaagctgtagattccaattgccatcctaacatgtaaaatgtagtttcttaatcacttaacacta--taaatttaaatagtttct |
312 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| || || | |||| ||||||| | || ||||||||||||||| |
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| T |
53324127 |
acattcaataacagtacaaggtgtagattccaattgccatcctaatatgtaaaatccagcgtcatgatcaattaacacaaaatatatttaaatagtttct |
53324226 |
T |
|
| Q |
313 |
gcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtcctcattctgatggtttatcaaccatatggtgttgtgcctac |
412 |
Q |
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| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
53324227 |
gaaagtctgcaacaatcatcttcaactctcgtcttccaaagaagtggttcattcatgtcctcattatgatggtttatcaatcatatggtgttgtgcctac |
53324326 |
T |
|
| Q |
413 |
aaaaaacacataaatgtaagaattggtgatttatattaaaacttgactagatcacta------acagaaagaaaagaaggaaccgatacctctaaaagtt |
506 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | |||||||| |||| || | ||| ||| || |||||||| ||||||||||||||| |
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| T |
53324327 |
aaaaaacac--aaatgtaagaattggtgatttatattacatcttgactatatcagtaggagagagagagagagaaaaaggaaccaatacctctaaaagtt |
53324424 |
T |
|
| Q |
507 |
ctgaacatgtaatattatgatttatgctttgagaataat |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
53324425 |
ctgaacatgtaatattatgatttatgctttgagaataat |
53324463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 53323936 - 53324055
Alignment:
| Q |
22 |
acataacacaatcaagagcctcatcacatagtaaaaaacatgtccactcaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtgggac |
121 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53323936 |
acataacacaatcaagagcctcatcaga--gtaacaa-catgtccactgaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtgacac |
53324032 |
T |
|
| Q |
122 |
tgaagctaaattgtttcaacacc |
144 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
53324033 |
tgaagctaaattgtttcaacacc |
53324055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 53323885 - 53323914
Alignment:
| Q |
1 |
ctgctaaagtatataacaaatacataacac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
53323885 |
ctgctaaagtatataacaaatacataacac |
53323914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 360 - 545
Target Start/End: Original strand, 20006058 - 20006243
Alignment:
| Q |
360 |
ttcattcatgtcctcattctgatggtttatcaaccatatggtgttgtgcctacaaaaaacacataaatgtaagaattggtgatttatattaaaacttgac |
459 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20006058 |
ttcattcatgtccttattatgatggtttatcaatcatatggtgttgtgcctacaaaaaacacataaatgtaagaattggtgatttatattaaatcttgac |
20006157 |
T |
|
| Q |
460 |
tagatcactaacagaaagaaaagaaggaaccgatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaataat |
545 |
Q |
| |
|
|| |||| || |||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
20006158 |
tatatcagtaggagaaagaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataat |
20006243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 360 - 545
Target Start/End: Complemental strand, 14124307 - 14124123
Alignment:
| Q |
360 |
ttcattcatgtcctcattctgatggtttatcaaccatatggtgttgtgcctacaaaaaacacataaatgtaagaattggtgatttatattaaaacttgac |
459 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14124307 |
ttcattcatgtccttattatgatggtttatcaatcatatggtgttgtgcctacaaaaa-cacataaatgtaagaattggtgatttatattaaatcttgac |
14124209 |
T |
|
| Q |
460 |
tagatcactaacagaaagaaaagaaggaaccgatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaataat |
545 |
Q |
| |
|
|| |||| || |||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14124208 |
tatatcagtaggagaaagaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataat |
14124123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 9283634 - 9283753
Alignment:
| Q |
301 |
taaatagtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtc-ctc--attctgatggtttatcaaccata |
397 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||| ||| || ||||||||||||| |||| |
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|
| T |
9283634 |
taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagtggttcattcatgtctctcatatgatgatggtttatcattcata |
9283733 |
T |
|
| Q |
398 |
tggtgttgtgcctacaaaaa |
417 |
Q |
| |
|
|| ||||||||||| ||||| |
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|
| T |
9283734 |
tgatgttgtgcctaaaaaaa |
9283753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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