View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_160 (Length: 215)
Name: NF16561_low_160
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_160 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 32989864 - 32990047
Alignment:
| Q |
21 |
gaaagttaaaacaaacaccagaaaactaactacacttct------atcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctc |
114 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989864 |
gaaagctaaaacaaacaccggaaaactaactacacttctatttctatcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctc |
32989963 |
T |
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| Q |
115 |
aaccaaccaacttctatagaaatccgtcacaagacactattgataccaatacataatggattcatgatccacttatagaagaaa |
198 |
Q |
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| T |
32989964 |
aaccaaccaacttttatagaaatccgtcacaagacactattgatatcaatacataatggattcatgatccacttatagaagaaa |
32990047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 26387388 - 26387452
Alignment:
| Q |
60 |
atcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctcaaccaaccaa |
124 |
Q |
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| T |
26387388 |
atcaggaacactcaaccacaaccgaacaagatgaagactaagaacaaaacccctcaatcaaccaa |
26387452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 15974991 - 15974851
Alignment:
| Q |
58 |
ctatcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctcaaccaaccaacttctatagaaatccgtcacaagacactattga |
157 |
Q |
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|||||| || || ||||||||||| ||| ||||| ||||||| || ||||||||| || |||||||| |||| | |||| | || |||||||||| | |
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| T |
15974991 |
ctatcaagagcatccaaccacaattgaataagaggaagactagaaatagaaccccttaatcaaccaacctctagacaaattcatcgcaagacactaccgt |
15974892 |
T |
|
| Q |
158 |
taccaatacataatggattcatgatccacttatagaagaaa |
198 |
Q |
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| T |
15974891 |
tgccaacacaaaaaggtttcatgacccactcataaaagaaa |
15974851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 7807988 - 7808156
Alignment:
| Q |
27 |
taaaacaaacaccagaaaactaactacacttctatcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctcaaccaaccaact |
126 |
Q |
| |
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||||| |||||||||||| | | ||| ||| |||||| ||||||||||| || | ||||||||| |||||| ||||| ||||||||| |||||||| |
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| T |
7807988 |
taaaaaaaacaccagaaatcaatctagactcatatcagtaacacccaacctcagtcgaacaagaggaagactcggaacataacccctcagtcaaccaacc |
7808087 |
T |
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| Q |
127 |
tctatagaaatccgtcacaagacactattgataccaatacataatggattcatgatccacttatagaag |
195 |
Q |
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|||| |||||||||||| |||||||| | | | || |||||||| |||||| |||||| ||||||| |
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| T |
7808088 |
aatataaaaatccgtcacatgacactatcggtgctaagacataatgtgttcatggtccactcatagaag |
7808156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 11523981 - 11524033
Alignment:
| Q |
27 |
taaaacaaacaccagaaaactaactacacttctatcaggaacacccaaccaca |
79 |
Q |
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| T |
11523981 |
taaaacaaacaccagaaaaccaactacactcctatcagaaacacccaaccaca |
11524033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 26255133 - 26255206
Alignment:
| Q |
33 |
aaacaccagaaaactaactacacttctatcaggaacacc-caaccacaatagaacaagagtaagactaagaaca |
105 |
Q |
| |
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||||| |||||||| |||||||||||||||| ||||||| |||||||| |||||| || ||||||| ||||| |
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| T |
26255133 |
aaacatcagaaaaccaactacacttctatcatgaacaccaaaaccacaaccgaacaaaaggaagactaggaaca |
26255206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 21033486 - 21033432
Alignment:
| Q |
60 |
atcaggaacacccaaccacaatagaacaagagtaagactaagaacagaacccctc |
114 |
Q |
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||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||||| |
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| T |
21033486 |
atcaggaacactcaaccacaaccgaacaagaggaagactaggaacaaaacccctc |
21033432 |
T |
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