View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_18 (Length: 540)

Name: NF16561_low_18
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_18
NF16561_low_18
[»] chr2 (4 HSPs)
chr2 (122-412)||(32006279-32006586)
chr2 (458-531)||(32006160-32006233)
chr2 (19-87)||(32006584-32006652)
chr2 (188-234)||(36963695-36963741)
[»] chr5 (4 HSPs)
chr5 (80-231)||(10161300-10161450)
chr5 (83-231)||(26916819-26916966)
chr5 (115-213)||(7277701-7277796)
chr5 (108-194)||(5142426-5142510)
[»] chr3 (8 HSPs)
chr3 (83-224)||(16973016-16973157)
chr3 (78-225)||(38076676-38076822)
chr3 (83-226)||(34145639-34145782)
chr3 (135-231)||(22101338-22101434)
chr3 (134-226)||(22176281-22176373)
chr3 (80-231)||(55048162-55048317)
chr3 (122-232)||(49002887-49002996)
chr3 (131-231)||(47770548-47770648)
[»] chr1 (11 HSPs)
chr1 (83-231)||(5609891-5610039)
chr1 (77-218)||(43810869-43811009)
chr1 (116-196)||(5851713-5851793)
chr1 (115-231)||(23926065-23926181)
chr1 (107-231)||(34900108-34900232)
chr1 (122-225)||(34058585-34058688)
chr1 (83-231)||(52652803-52652958)
chr1 (115-232)||(43812759-43812876)
chr1 (110-213)||(38595421-38595524)
chr1 (143-226)||(25175631-25175714)
chr1 (160-231)||(45093640-45093711)
[»] chr4 (6 HSPs)
chr4 (83-222)||(38380244-38380383)
chr4 (91-231)||(33632796-33632935)
chr4 (107-226)||(2321793-2321912)
chr4 (86-209)||(12701830-12701953)
chr4 (122-226)||(19655491-19655595)
chr4 (130-201)||(9132088-9132159)
[»] chr7 (4 HSPs)
chr7 (83-233)||(32651885-32652035)
chr7 (115-224)||(1470858-1470968)
chr7 (157-226)||(21708233-21708302)
chr7 (107-218)||(38198241-38198352)
[»] chr8 (7 HSPs)
chr8 (84-226)||(35063659-35063802)
chr8 (116-231)||(5493218-5493333)
chr8 (83-231)||(43446072-43446221)
chr8 (124-232)||(34422832-34422944)
chr8 (130-196)||(1098787-1098853)
chr8 (110-224)||(14578348-14578462)
chr8 (104-158)||(14847571-14847625)
[»] scaffold0031 (2 HSPs)
scaffold0031 (154-231)||(78656-78733)
scaffold0031 (82-143)||(77337-77398)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 122 - 412
Target Start/End: Complemental strand, 32006586 - 32006279
Alignment:
Q  122 aaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttct 221  Q
    |||||||||||||||||||||  ||| ||||| |||| ||||| |||||||| ||||||||||||| |||||||| |||| ||||| |||||| ||||||    
T  32006586 aaaccaaatatagtataagtaccttataacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttctttttttcttttct 32006487  T
Q  222 taactggtgc-tc------------taacaaaacctttcttttattttaggttggag---tattcgtggtactacccctctttctccttttattatattt 305  Q
    ||||| |||| ||            |||||| ||| |||||||||||| ||||||||   |||||||||||||||||||||||||||||| |||||||||    
T  32006486 taactagtgcctcggggacactggttaacaagacccttcttttattttgggttggaggaatattcgtggtactacccctctttctcctttcattatattt 32006387  T
Q  306 atataattctcttttgttgttaaaagaaattatcatttttattnnnnnnntttgtgtagtttagtgg-aatgttttgtcatgcttgtgtaattggatttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32006386 atataattctcttttgttgttaaaagaaattatcatttttattaaaaaaaattgtgtagtttagtggaaatgttttgtcatgcttgtgtaattggatttt 32006287  T
Q  405 aataccct 412  Q
    ||||||||    
T  32006286 aataccct 32006279  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 458 - 531
Target Start/End: Complemental strand, 32006233 - 32006160
Alignment:
Q  458 gaaggttcctgatcgcaggaaaggactatgtactacatgagacattgaacaatttgacttgttgctagaattat 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32006233 gaaggttcctgatcgcaggaaaggactatgtactacatgagacattgaacaatttgacttgttgctagaattat 32006160  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 32006652 - 32006584
Alignment:
Q  19 tgtttaacgaactgtacatcaatcctttgcttgtattcattgggtccttttgtttttcttttatggaaa 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32006652 tgtttaacgaactgtacatctatcctttgcttgtattcattgggtccttttgtttttcttttatggaaa 32006584  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 36963695 - 36963741
Alignment:
Q  188 gttttcaatacaaacatttccttttttgttttcttaactggtgctct 234  Q
    |||||||||||||  |||| ||||||||||||||||||| |||||||    
T  36963695 gttttcaatacaactatttacttttttgttttcttaactagtgctct 36963741  T

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Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 10161450 - 10161300
Alignment:
Q  80 tatggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaa 179  Q
    |||||||||| |||||||| ||  || ||||||| |||||| |||||||||||||||||||||  || |||||| |||||||||| |||||||| |||||    
T  10161450 tatggaaaatgttaactagcgcc-ccagggcactagttaaggaaaccaaatatagtataagtaccttggaacttgtgtaatcaaagtttaaaaagtgtaa 10161352  T
Q  180 agaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    | ||||||||||||||| |||| |||||||||||||||| ||||||| ||||    
T  10161351 aaaatgatgttttcaatgcaaatatttccttttttgtttccttaactagtgc 10161300  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 26916966 - 26916819
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    ||||||| |||||||||| | | ||| |||| || ||| |||||||||||| |||||||| |||  ||||| |||| | |||||||||||| |||||| |    
T  26916966 ggaaaatgttaactagtg-tcctgggacactcgtcaaggaaaccaaatataatataagtactttgaaacttgtgtagtaaaaatttaaaaagtgtaaaaa 26916868  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||| |||||||| |||| |||| ||||||||||| ||||||||||||    
T  26916867 atgattttttcaatgcaaatattttcttttttgtttccttaactggtgc 26916819  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 7277701 - 7277796
Alignment:
Q  115 gttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttt 213  Q
    |||||||||| |||||||||||   |||| ||| ||||| |||||||||| ||||||||||||||||||| |||||||| ||||||| ||||| |||||    
T  7277701 gttaagaaaatcaaatatagta---gtatcttaaaacttgtgtaatcaaagtttaaaaaatgtaaagaattatgttttccatacaaatatttctttttt 7277796  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 5142426 - 5142510
Alignment:
Q  108 ggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttca 194  Q
    |||||| | ||||||||| ||||||||||||||||| ||| ||||||| ||||  ||| |||||||||||||| ||| |||||||||    
T  5142426 ggcactagataagaaaactaaatatagtataagtatcttaaaacttatataat--aaagttaaaaaatgtaaaaaattatgttttca 5142510  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 16973157 - 16973016
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    ||||||| ||||| |||||  ||||| |||| |||||| |||||||||||||||||||||| || |||||| |||| ||||| |||||||| ||||||||    
T  16973157 ggaaaatgttaaccagtgcccccgggacactagttaaggaaaccaaatatagtataagtatcttggaacttgtgtagtcaaagtttaaaaagtgtaaaga 16973058  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttcttaa 224  Q
    || |||||||||||||||| ||||| |||||||||| |||||    
T  16973057 attatgttttcaatacaaatatttctttttttgtttccttaa 16973016  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 38076676 - 38076822
Alignment:
Q  78 tttatggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgt 177  Q
    |||||| ||||| |||||||||  | |||| ||||| |||||  |||  ||||||| ||||||||  ||  ||||| |||| | |||||||||||| |||    
T  38076676 tttatgaaaaatgttaactagta-tcccggagcactagttaaagaaattaaatatattataagtaccttgaaacttgtgtagttaaaatttaaaaagtgt 38076774  T
Q  178 aaagaatgatgttttcaatacaaacatttccttttttgttttcttaac 225  Q
    ||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  38076775 aaaaaatgatgttttcaatacaaatattttcttttttgttttcttaac 38076822  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 34145782 - 34145639
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    ||||||||||||| |||||  | || ||| |  ||||||||| |||||||||||| | ||| ||  || |  |||||||||| |||||||| |||||| |    
T  34145782 ggaaaatattaacaagtgcccctggagcattgtttaagaaaatcaaatatagtatgaatatcttgaaattcttgtaatcaaagtttaaaaagtgtaaaaa 34145683  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttcttaact 226  Q
    ||||||||||||||||||| |||| ||||||| ||| |||||||    
T  34145682 atgatgttttcaatacaaatattttcttttttatttccttaact 34145639  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 22101338 - 22101434
Alignment:
Q  135 tataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||||||  || |||||| |||| ||||| |||||||| | |||||||||||| ||||||| |||| |||| ||||||||||  ||||||| ||||    
T  22101338 tataagtaccttggaacttgtgtagtcaaagtttaaaaagtataaagaatgatgctttcaatgcaaatattttcttttttgttaccttaactagtgc 22101434  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 22176281 - 22176373
Alignment:
Q  134 gtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaact 226  Q
    |||||||||  || |||||| |||| ||||| |||||||| | |||| ||||||||||||||| |||| |||| ||||||||||  |||||||    
T  22176281 gtataagtaccttggaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaaatattttcttttttgttaccttaact 22176373  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 55048162 - 55048317
Alignment:
Q  80 tatggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatat-----agtataagtattttagaacttatgtaatcaaaatttaaaaaa 174  Q
    |||||||||| |||||||||||  |||| ||||| ||||||||||||||||||     | || |||||| || ||| || |||| ||||| ||| ||||     
T  55048162 tatggaaaatgttaactagtgca-ccggtgcactagttaagaaaaccaaatataatacaatacaagtatcttggaatttgtgtagtcaaagttttaaaag 55048260  T
Q  175 tgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    | |||| | | ||||||||||| |||| |||||||||||| ||| ||||||| ||||    
T  55048261 tataaaaattaatgttttcaatgcaaatatttccttttttatttccttaactagtgc 55048317  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 49002887 - 49002996
Alignment:
Q  122 aaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttct 221  Q
    |||||||||||| ||||| |||||| ||| |  |||| | |||||||||||| |||||| ||||||||||| ||| ||||  |||| |||| ||||| ||    
T  49002887 aaaccaaatataatataa-tattttggaaatagtgtagttaaaatttaaaaagtgtaaataatgatgtttttaatgcaaatgtttctttttatgtttcct 49002985  T
Q  222 taactggtgct 232  Q
    ||||| |||||    
T  49002986 taactagtgct 49002996  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 47770648 - 47770548
Alignment:
Q  131 atagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaactggtg 230  Q
    |||||| ||||||||| ||| ||||||| | ||| |||||||||| ||||   ||||||||||||| || | ||||| | |||||||| ||||||| |||    
T  47770648 atagtaaaagtattttggaatttatgtagtgaaagtttaaaaaatataaaaggtgatgttttcaatgcatatatttcttcttttgtttccttaactagtg 47770549  T
Q  231 c 231  Q
    |    
T  47770548 c 47770548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 5610039 - 5609891
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    ||||||| |||||||||||  | || |||||||||||||||||||||||||||||||||   ||| ||||| |||| | ||| |||||||| ||||||||    
T  5610039 ggaaaatgttaactagtgccccaggagcacttgttaagaaaaccaaatatagtataagtgcattaaaacttgtgtagttaaagtttaaaaagtgtaaaga 5609940  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||  || |||||||||| |||| ||||||||||| ||||||| ||||    
T  5609939 atgacattctcaatacaaatattttcttttttgtttccttaactagtgc 5609891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 43811009 - 43810869
Alignment:
Q  77 ttttatggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatg 176  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||||||||||||||||||||| ||||| ||| ||||| |||| ||||| |||||||||||    
T  43811009 ttttatgaaaaatgttaaccagtgcccctggggcactcgttaagaaaaccaaatatagtatgagtatcttaaaacttgtgtagtcaaagtttaaaaaatg 43810910  T
Q  177 taaagaatgatgttttcaatacaaacatttccttttttgttt 218  Q
    || | || |||||||||||| |||| | ||||||||||||||    
T  43810909 tata-aaagatgttttcaatgcaaatacttccttttttgttt 43810869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 5851713 - 5851793
Alignment:
Q  116 ttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaat 196  Q
    ||||| ||| |||||||||||||||||||||||||||| || | ||||| ||||||||||| |||||||||||||||||||    
T  5851713 ttaaggaaatcaaatatagtataagtattttagaacttgtgcagtcaaagtttaaaaaatgaaaagaatgatgttttcaat 5851793  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 23926065 - 23926181
Alignment:
Q  115 gttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttcctttttt 214  Q
    ||||||||||  ||||||| |||| ||||||| |||||| |||| ||||| |||||||| ||||||||||||| |||||||| |||| ||||| ||||||    
T  23926065 gttaagaaaattaaatataatataggtattttggaacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttcttttttt 23926164  T
Q  215 gttttcttaactggtgc 231  Q
     ||| ||||||| ||||    
T  23926165 ctttccttaactagtgc 23926181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 34900232 - 34900108
Alignment:
Q  107 gggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacattt 206  Q
    ||||||| |||||| ||||| |||||| ||||||    ||||||||| |||| ||||| |||||||| | |||||||||||||| ||||| |||| ||||    
T  34900232 gggcactggttaaggaaaccgaatataatataagagcattagaacttgtgtagtcaaagtttaaaaagtataaagaatgatgttctcaatgcaaatattt 34900133  T
Q  207 ccttttttgttttcttaactggtgc 231  Q
    |||||||||||| | ||||| ||||    
T  34900132 ccttttttgtttccgtaactagtgc 34900108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 34058585 - 34058688
Alignment:
Q  122 aaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttct 221  Q
    |||| |||||||||||||| |  ||  ||||| |||||||||| || |||||||||||| ||| || ||||||||||||| |||||| ||||||||||||    
T  34058585 aaactaaatatagtataagaaccttgaaacttgtgtaatcaaagttaaaaaaatgtaaaaaattatattttcaatacaaatatttccctttttgttttct 34058684  T
Q  222 taac 225  Q
    ||||    
T  34058685 taac 34058688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 52652803 - 52652958
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatca------aaatttaaaaaa-t 175  Q
    ||||||| |||||||||||  |||||||||| |||||| ||||||||||||||| |||||| || |||||| |||| |||      ||| |||||||| |    
T  52652803 ggaaaatgttaactagtgcc-ccggggcactagttaaggaaaccaaatatagtacaagtatcttggaacttgtgtagtcaatagtcaaagttaaaaaagt 52652901  T
Q  176 gtaaagaatgatgttttcaatacaaacatttc-cttttttgttttcttaactggtgc 231  Q
    |||||| ||||||||||| || |||| |||||  |||||||||| ||||||| ||||    
T  52652902 gtaaaggatgatgttttccatgcaaatatttcttttttttgtttccttaactagtgc 52652958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 43812759 - 43812876
Alignment:
Q  115 gttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttcctttttt 214  Q
    ||||||||||||||||||| ||  ||||| ||  ||||| || ||||||| |||||||||| | ||  ||||||||||||||||||| |||| | |||||    
T  43812759 gttaagaaaaccaaatatactacgagtatcttgaaacttgtgaaatcaaagtttaaaaaatatcaaagatgatgttttcaatacaaatattttcattttt 43812858  T
Q  215 gttttcttaactggtgct 232  Q
     |||  |||||| |||||    
T  43812859 atttctttaactagtgct 43812876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 38595421 - 38595524
Alignment:
Q  110 cacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttcct 209  Q
    |||| ||||||||||||||| ||| ||||| || ||| ||| || | || ||||| |||||||| |||||| ||||||||||| ||| |||| ||||| |    
T  38595421 cactggttaagaaaaccaaacataatataaatacttttgaatttgtatagtcaaagtttaaaaagtgtaaataatgatgtttttaatgcaaatatttctt 38595520  T
Q  210 tttt 213  Q
    ||||    
T  38595521 tttt 38595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 25175714 - 25175631
Alignment:
Q  143 ttttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaact 226  Q
    ||||| |||||||||||||||   || |||||| |||| | || ||||||||||| |||  || ||||||||||||||||||||    
T  25175714 ttttaaaacttatgtaatcaagtatttaaaaatataaaaattgttgttttcaatataaaatttaccttttttgttttcttaact 25175631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 45093711 - 45093640
Alignment:
Q  160 tcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||| || ||||| |||||| ||| ||||||||||| |||| ||||||| |||||||| ||||||| ||||    
T  45093711 tcaaagttaaaaaagtgtaaaaaattatgttttcaatgcaaatatttcctcttttgtttccttaactagtgc 45093640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 38380244 - 38380383
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    |||||||||||||||||    ||||| |||| |||||| ||||||||||||||||||||| ||| ||| || |||| ||||||| |||||| ||||||||    
T  38380244 ggaaaatattaactagtatccccgggacactagttaaggaaaccaaatatagtataagtactttggaatttgtgtagtcaaaatataaaaagtgtaaaga 38380343  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttctt 222  Q
    || ||||||| |||  ||| ||||||||||||||||||||    
T  38380344 ataatgtttttaatgtaaatatttccttttttgttttctt 38380383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 33632796 - 33632935
Alignment:
Q  91 ttaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgtt 190  Q
    |||||||||| | |||||| ||| |||||| |||||||||||||||||||||  ||  || || || | ||||| |||||||| ||||||||||||| ||    
T  33632796 ttaactagtg-tcccggggaactggttaaggaaaccaaatatagtataagtaccttgaaatttgtgcagtcaaagtttaaaaagtgtaaagaatgatatt 33632894  T
Q  191 ttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||||||||| |||| ||||||||||| ||||||| ||||    
T  33632895 ttcaatacaaatattttcttttttgtttccttaactagtgc 33632935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 2321793 - 2321912
Alignment:
Q  107 gggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacattt 206  Q
    ||||||| | ||||||||| ||||||||||||||||| || |||||| |||  | ||| |||||||| ||||||  |||||||||||||| |||| ||||    
T  2321793 gggcactagataagaaaactaaatatagtataagtatcttggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaaatattt 2321892  T
Q  207 ccttttttgttttcttaact 226  Q
    | | |||||||| |||||||    
T  2321893 cttcttttgtttccttaact 2321912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 12701953 - 12701830
Alignment:
Q  86 aaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatg 185  Q
    |||| |||||| ||||  |||||||||| |||||| || |||||||||| |||||||  ||  ||||| | || ||||| |||||||| |||||||||||    
T  12701953 aaatgttaactggtgcccccggggcactggttaaggaagccaaatatagcataagtaccttgaaacttgtatagtcaaagtttaaaaagtgtaaagaatg 12701854  T
Q  186 atgttttcaatacaaacatttcct 209  Q
    ||||||||||| |||| |||||||    
T  12701853 atgttttcaatgcaaatatttcct 12701830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 19655595 - 19655491
Alignment:
Q  122 aaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttct 221  Q
    |||||||||||| ||||||| | ||  ||||| |||| ||||| |||||||| |||||||||| ||||||| |||||||| ||||| |||||| ||| ||    
T  19655595 aaaccaaatataatataagtgtcttgaaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgtttttaatacaaatatttctttttttatttcct 19655496  T
Q  222 taact 226  Q
    |||||    
T  19655495 taact 19655491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 9132088 - 9132159
Alignment:
Q  130 tatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaa 201  Q
    |||||||||||||| ||  || || |||| ||||| |||||||| |||||| ||||||||||||||| ||||    
T  9132088 tatagtataagtatcttgaaatttgtgtagtcaaagtttaaaaagtgtaaaaaatgatgttttcaatccaaa 9132159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 32652035 - 32651885
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaaga 182  Q
    ||||||| ||||  |||||| ||||| |||  |||||| |||||||||||||||||||| | ||  ||||| |||| ||||| |||||||| | |||| |    
T  32652035 ggaaaatgttaataagtgctcccgggacaccggttaaggaaaccaaatatagtataagtgtcttgaaacttgtgtagtcaaagtttaaaaagtataaata 32651936  T
Q  183 atgatgttttcaatacaaacatttccttttttgttttcttaactggtgctc 233  Q
    |||||||||||||| |||| ||||| |||||||||| ||||||| ||||||    
T  32651935 atgatgttttcaatgcaaatatttctttttttgtttccttaactagtgctc 32651885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 1470858 - 1470968
Alignment:
Q  115 gttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaa-tgtaaagaatgatgttttcaatacaaacatttccttttt 213  Q
    ||||| ||||| ||||||||||| ||| | ||||||||| |||| ||||||||||||||| |||||| |||||||||||||||  ||| || || |||||    
T  1470858 gttaaaaaaactaaatatagtatgagtgtcttagaacttgtgtagtcaaaatttaaaaaagtgtaaaaaatgatgttttcaatgtaaatatctctttttt 1470957  T
Q  214 tgttttcttaa 224  Q
    ||||| |||||    
T  1470958 tgtttccttaa 1470968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 21708302 - 21708233
Alignment:
Q  157 taatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaact 226  Q
    |||||||| ||||| || ||||||||||||||||||||||  ||| |||| |||||||||||||||||||    
T  21708302 taatcaaagtttaagaagtgtaaagaatgatgttttcaatgtaaatatttacttttttgttttcttaact 21708233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 38198352 - 38198241
Alignment:
Q  107 gggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacattt 206  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| |||  | || | | |||||||||||| |||||||||| ||||||||| |  ||| ||||    
T  38198352 gggcactggttaaggaaatcaaatatagtataagtactttggaatctgtgcacttaaaatttaaaaagtgtaaagaataatgttttcagtgtaaatattt 38198253  T
Q  207 ccttttttgttt 218  Q
     |||||||||||    
T  38198252 tcttttttgttt 38198241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 35063659 - 35063802
Alignment:
Q  84 gaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaa 183  Q
    |||||| |||||| || | |||| || ||| |||||| |||||||||||||||||||||  || |||||| |||| ||||| ||| |||| |||||||||    
T  35063659 gaaaatgttaactggtacctccgaggtactggttaaggaaaccaaatatagtataagtaccttggaacttgtgtagtcaaagtttcaaaagtgtaaagaa 35063758  T
Q  184 tgatgttttcaatacaaacatttcct-tttttgttttcttaact 226  Q
     |||||||||||| |||| |||| || |||||||||||||||||    
T  35063759 agatgttttcaatgcaaatattttctatttttgttttcttaact 35063802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 5493218 - 5493333
Alignment:
Q  116 ttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttg 215  Q
    ||||| ||||||||||||||||||  | ||| |||||| | || ||||| || ||||| |||||||||| ||||||||||| |||| |||||||||||||    
T  5493218 ttaaggaaaccaaatatagtataaagactttggaacttgtatactcaaagttaaaaaagtgtaaagaattatgttttcaatgcaaatatttccttttttg 5493317  T
Q  216 ttttcttaactggtgc 231  Q
    ||| ||||||| ||||    
T  5493318 tttccttaactagtgc 5493333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 43446072 - 43446221
Alignment:
Q  83 ggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagt--attttagaacttatgtaatcaaaatttaaaaaatgtaaa 180  Q
    ||||||| |||||||||  | |||||||||  |||||| |||| |||||||||||||||  || || |||||| |||| |||||||||||||| ||| ||    
T  43446072 ggaaaatgttaactagta-tcccggggcacaagttaagtaaacaaaatatagtataagtgtatcttggaacttgtgtactcaaaatttaaaaagtgtgaa 43446170  T
Q  181 gaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
     ||||||||||| |||| ||| ||||| |||||||||| ||||||| ||||    
T  43446171 aaatgatgtttttaatataaatatttctttttttgtttccttaactagtgc 43446221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 34422832 - 34422944
Alignment:
Q  124 accaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaa----agaatgatgttttcaatacaaacatttccttttttgtttt 219  Q
    |||||||||||||||||| |  | |||||| |||| ||||| |||||||| || ||    | ||||||||||||||| |||| ||||| ||||||||||     
T  34422832 accaaatatagtataagtgtcatggaacttgtgtagtcaaagtttaaaaagtgaaagaaaaaaatgatgttttcaatgcaaatatttctttttttgtttc 34422931  T
Q  220 cttaactggtgct 232  Q
    ||||||| |||||    
T  34422932 cttaactagtgct 34422944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 1098853 - 1098787
Alignment:
Q  130 tatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaat 196  Q
    |||||||||| ||| |||||| ||||||| ||||| |||||||| |||||| ||  |||||||||||    
T  1098853 tatagtataattatcttagaatttatgtagtcaaagtttaaaaagtgtaaaaaaatatgttttcaat 1098787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 14578348 - 14578462
Alignment:
Q  110 cacttgttaagaaaaccaaatatagtataagtattttagaacttatgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttcct 209  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||| || | | ||| ||| |||| ||||||  |||||||||| ||| |||| ||||  |    
T  14578348 cactggttaagaaaactaaatatagtatgaatatcttagaacttgtgcagttaaagttttaaaagtgtaaaagatgatgttttaaatgcaaatatttttt 14578447  T
Q  210 tttttgttttcttaa 224  Q
     |||| |||||||||    
T  14578448 atttttttttcttaa 14578462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 14847571 - 14847625
Alignment:
Q  104 ccggggcacttgttaagaaaaccaaatatagtataagtattttagaacttatgta 158  Q
    ||||| |||| |||||| |||||||||||||||||||| | ||||||||| ||||    
T  14847571 ccgggacactggttaaggaaaccaaatatagtataagtgtcttagaacttgtgta 14847625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 78656 - 78733
Alignment:
Q  154 atgtaatcaaaatttaaaaaatgtaaagaatgatgttttcaatacaaacatttccttttttgttttcttaactggtgc 231  Q
    ||||| ||||| |||||||| |||| ||||||||||||| ||| |||| |||||||||||||||| ||||||| ||||    
T  78656 atgtagtcaaagtttaaaaagtgtatagaatgatgtttttaatgcaaatatttccttttttgtttccttaactagtgc 78733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 77337 - 77398
Alignment:
Q  82 tggaaaatattaactagtgcttccggggcacttgttaagaaaaccaaatatagtataagtat 143  Q
    |||||||| ||||| ||||| ||||||||||| |||||| ||| |||||||||||| |||||    
T  77337 tggaaaatgttaacgagtgcctccggggcactggttaaggaaatcaaatatagtatgagtat 77398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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