View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_2 (Length: 953)
Name: NF16561_low_2
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 25899817 - 25900419
Alignment:
| Q |
19 |
tataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttctctgt--- |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25899817 |
tataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttctctctgag |
25899916 |
T |
|
| Q |
116 |
acattgct-ttgtatttgataatgattttttaaccataaacctttctgattcttattttaagaacagtttctgttctcaaagccgttagaatcaacgata |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899917 |
acattgctcttgtatttgataatgattttttaaccataaacctttctgattcttattttaagaacagtttctgttctcaaagccgttagaatcaacgata |
25900016 |
T |
|
| Q |
215 |
atgcaccaaataccatcaataagttgtgcaagtgagagacatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900017 |
atgcaccaaataccatcaataagttgtgcaagtgagagacatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgta |
25900116 |
T |
|
| Q |
315 |
tgaagagctttgttaatgtcttcttctaacgttgttacataaaatgaccaaacagacctacgccaaatatcgcagatgagtt-----atctgaagtatga |
409 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||| |
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| T |
25900117 |
cgaagagctttgttaatg---tcttctaacgttgttacataaaatgaccaaacagacccacgccaaatatcgtacatgagttatctgatctgaagtatga |
25900213 |
T |
|
| Q |
410 |
gcatacaaccgcaaacaaaccaactactcccgcacattgtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtttacatacatcatg |
509 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25900214 |
gcatacaaacgcaaacaaaccaactactcccacacattgtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtag-ttacatacatcatg |
25900312 |
T |
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| Q |
510 |
tgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcacaac |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25900313 |
tgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcgcaac |
25900412 |
T |
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| Q |
610 |
aggtctc |
616 |
Q |
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||||||| |
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| T |
25900413 |
aggtctc |
25900419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 158 - 616
Target Start/End: Complemental strand, 40068242 - 40067818
Alignment:
| Q |
158 |
ttctgattcttattttaagaacagtttctgttctcaaagccgttagaatcaacgataatgcaccaaataccatcaataagttgtgcaagtgagagacata |
257 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||| ||| ||| |||| |||| ||||||||||| |||||||| | ||||| |||| | |
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| T |
40068242 |
ttctggttcctatgttgagaacagtttctgttctcaaagctgttggaaccaacaataaagcaccaaatacagtcaataagcttggcaagagagaaa---- |
40068147 |
T |
|
| Q |
258 |
gatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgtatgaagagctttgttaatgtcttcttctaacgttgttacataaa |
357 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| | || |||||||||| |||| |||| |||||| |
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| T |
40068146 |
gatgatttttc----taatattgtaaaaatgatgccttcatttaagtttcaggtgtatgaagagatctgccaatgtcttct---aacgatgttgcataaa |
40068054 |
T |
|
| Q |
358 |
a-tgaccaaacagacctacgccaaatatcgcagatgagttatctgaagtatgagcatacaaccgcaaacaaaccaactactcccgcacattgtaactggt |
456 |
Q |
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| T |
40068053 |
aatgaccaaacagatccacatcaaatatcgcatatgagttgtctgaagtaggaacatacaac-----acaaataaagt--------------taactagt |
40067973 |
T |
|
| Q |
457 |
ctcacaccatatcaaaaagtcatgaccaaatagtgtagtttacatacatcatgtgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgt |
556 |
Q |
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| T |
40067972 |
gtcacacaatatcaagaagtcatgatcaaatagtgtagctg-----catcatatgaaatgcaatacctcaaagagcagctcatctggtaagcaacgatgt |
40067878 |
T |
|
| Q |
557 |
aaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcacaacaggtctc |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |
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| T |
40067877 |
aaaagagaagaatcaacatgaggctttctacttgcacttccaaaaggcgcgacaggtctc |
40067818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 40068443 - 40068361
Alignment:
| Q |
21 |
taccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaat |
103 |
Q |
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| T |
40068443 |
taccgccattttcgacatacgcacgatgcttttcccatatcatatggagtcattcgagcaaagacctgcaaaatgttttcaat |
40068361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 785 - 953
Target Start/End: Original strand, 6844011 - 6844186
Alignment:
| Q |
785 |
gctgaatagcttctaactaactcacaggttctgaaa-----caatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacctcagtgat |
879 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| |||| ||||||| ||||||| | |||||||||| |
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| T |
6844011 |
gctgaatagcttctaactcactcacaggttctgaaacgaaacaatgaaacaaagaagaagaaaatataacgacgatgtagaagaagaccgcctcagtgat |
6844110 |
T |
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| Q |
880 |
ttatccgattgtgttattcttcacatactctcttttgtttacgc--cgtgctgttcaaacttgcattttatccaaa |
953 |
Q |
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||| |||||||||||||||||||||||||||||||| | | || | |||||||||||||||||| |||||||| |
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| T |
6844111 |
ttacccgattgtgttattcttcacatactctcttttttggatgcaatgcgctgttcaaacttgcattctatccaaa |
6844186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 783 - 953
Target Start/End: Original strand, 6889025 - 6889205
Alignment:
| Q |
783 |
tcgctgaatagcttctaactaactcacaggttctgaaacaatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaa------gaagatcacctcagt |
876 |
Q |
| |
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||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| ||||||| |
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| T |
6889025 |
tcgctgaatcacttcttactcactcacaggttctgaaacaatgaagccaggaagaaaaaaatacaacgacgatgtaaaagaagatgaagatcgcctcagt |
6889124 |
T |
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| Q |
877 |
gatttatccgattgtgttattcttcacatactctcttttgtttacgccgt----gctgttcaaacttgcattttatccaaa |
953 |
Q |
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|| ||| |||||||||||||||||||||||||||||||| | || || | |||||||||||||||||| |||||||| |
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| T |
6889125 |
gacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaa |
6889205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 801 - 908
Target Start/End: Complemental strand, 30598409 - 30598302
Alignment:
| Q |
801 |
ctaactcacaggttctgaaacaatgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacctcagtgatttatccgattgtgttattctt |
900 |
Q |
| |
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||||||||||| ||| | |||||||| ||||||||| |||| ||||| | ||||||||||||||| ||||||||||||| || |||||||| ||||| |
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| T |
30598409 |
ctaactcacagcttcacagacaatgaaacgaggaagaaaaaaacacaacgactatgtaaaagaagatcgcctcagtgatttacccaattgtgttcttctt |
30598310 |
T |
|
| Q |
901 |
cacatact |
908 |
Q |
| |
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| |||||| |
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| T |
30598309 |
cgcatact |
30598302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 777 - 912
Target Start/End: Complemental strand, 9236051 - 9235911
Alignment:
| Q |
777 |
taattgtcgctgaatagcttctaactaactcacaggttctgaaacaa-----tgaagtgaggaagaagaaaatgcaacgtcgatgtaaaagaagatcacc |
871 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||||| |||||| | || |||||||||||||| || | || |||||||||| | || |
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| T |
9236051 |
taattgtcgctaaatagcttctaactcacccacaggttctcaaacaaaacgatcaaaagaggaagaagaaaagatcgcgaccatttaaaagaagaccgcc |
9235952 |
T |
|
| Q |
872 |
tcagtgatttatccgattgtgttattcttcacatactctct |
912 |
Q |
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||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
9235951 |
tcaatgatttacccgattgtgttattcttcacataatctct |
9235911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 41099531 - 41099456
Alignment:
| Q |
38 |
cacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttctct |
113 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||| |
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| T |
41099531 |
cacacaagaggctttttcctcatcatatggagtcattctagcaaatacttgcaaagtgtattcaataaatctctct |
41099456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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