View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_20 (Length: 530)
Name: NF16561_low_20
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 32607137 - 32607634
Alignment:
| Q |
17 |
gaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgacttaattgtgagctatacggaagaactatacact |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32607137 |
gaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt----gtgagctatacggaagaactatacact |
32607232 |
T |
|
| Q |
117 |
gagcacaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
32607233 |
gagcacaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaactctcattcatcca-acctgtaaatactttccaatcacaaatcagta |
32607331 |
T |
|
| Q |
217 |
gtgttttcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatg |
316 |
Q |
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| T |
32607332 |
gagttttcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatg |
32607431 |
T |
|
| Q |
317 |
cttcaaattggtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagct------caacaaccatagagatattatcacaaagcttaaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32607432 |
cttcaaattggtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagctcaaaagcaacaaccatagagatattatcacaaagcttaaat |
32607531 |
T |
|
| Q |
411 |
acagataaattttctgatggaaatcttttcttagattgtcctctggccagtgagaacggagaagagtggactttaattagttacagtaatggagagaaag |
510 |
Q |
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| T |
32607532 |
acagataaattttctgatggaaatcttttcttagattgtcctctggccagtgagaacggagaagagtggactttaattagttacagtaatggagagaaag |
32607631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 121 - 375
Target Start/End: Original strand, 32568829 - 32569083
Alignment:
| Q |
121 |
acaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagtagtgt |
220 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||| | |||||||||| | | |||||||||||||||| || |
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| T |
32568829 |
acaaagattcttcaaagtctcagctaaagaagctgattaaaaggtcaaactctcattcatcaatacctgtaaatgctattcaatcacaaatcagtaaagt |
32568928 |
T |
|
| Q |
221 |
tttcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttc |
320 |
Q |
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| T |
32568929 |
tttctacaagggtttatttttccgacatgttagtggacttgacaataggattccaaagcatatggtgagcgcagatgagaaatatcttcgtcgctgtctt |
32569028 |
T |
|
| Q |
321 |
aaattggtgcataaatttgcagttaaagcagctcaatggaacaaacctatgagct |
375 |
Q |
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|||| || ||||| |||||| |||||| |||||||||||| |||| |||||| |
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| T |
32569029 |
gaattcgtacataaccatgcagtaaaagcaactcaatggaacatacctttgagct |
32569083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 32568734 - 32568798
Alignment:
| Q |
17 |
gaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttg |
81 |
Q |
| |
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|
| T |
32568734 |
gaagatggaaaatgtaagcttatgggttcaaaaagagggtcaatggaaaaaagattcattgcttg |
32568798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 32575158 - 32575225
Alignment:
| Q |
18 |
aagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt |
85 |
Q |
| |
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|||||||||||||||||||| | ||||| ||| |||| |||||||||| |||||||||||||||||| |
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| T |
32575158 |
aagatggaaaatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgactt |
32575225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 347
Target Start/End: Original strand, 32617952 - 32618053
Alignment:
| Q |
246 |
catgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattggtgcataaatttgcagtta |
345 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||| |||||||| || |||||||||| |||| ||||||| ||||||| ||||| | |||| ||| |
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| T |
32617952 |
catgttaatggactacacaataggatttgaaagcatatggtgagcgtggacgagaaacatctccgtcaatgcttcgaattggtacataattgtgcactta |
32618051 |
T |
|
| Q |
346 |
aa |
347 |
Q |
| |
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|| |
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|
| T |
32618052 |
aa |
32618053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 32599129 - 32599209
Alignment:
| Q |
223 |
tcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaac |
303 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||||| ||| ||||||| ||||| |||||||| || |||||| |
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|
| T |
32599129 |
tcttcaagggtttatttcttcgccatgttaatggacttgacaatagggttccaaaccatatggtgagcgtggacgagaaac |
32599209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 32578123 - 32578156
Alignment:
| Q |
17 |
gaagatggaaaatgtaagcttttggattcaaaaa |
50 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
32578123 |
gaagatggaaaatgtaagcttatggattcaaaaa |
32578156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 32617355 - 32617388
Alignment:
| Q |
17 |
gaagatggaaaatgtaagcttttggattcaaaaa |
50 |
Q |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
32617355 |
gaagatggaaaatgtaagcttatggattcaaaaa |
32617388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 32574452 - 32574492
Alignment:
| Q |
102 |
gaagaactatacactgagcacaaagattcttcgaagtctca |
142 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||| |
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| T |
32574452 |
gaagcactatacactgaacgcaaagattcttcgaagtctca |
32574492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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