View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_21 (Length: 528)
Name: NF16561_low_21
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 41077573 - 41078046
Alignment:
| Q |
19 |
tcaatggcagtaataaacccaggttgtgaagtaacctttcaattgatatagccgagacatttcataccggcaaggattgaattggcttgtctttgccaag |
118 |
Q |
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| T |
41077573 |
tcaatggcagtaataaacccaggttgtgaagtaacctttcgattgatatagccgagacatttcataccggcaaggattgaattggcttgtctttgccaag |
41077672 |
T |
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| Q |
119 |
tatgaaattggaagcggaaagcttgatagctatgtgagcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaattacttggt |
218 |
Q |
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| T |
41077673 |
tatgaaattggaagcggaaagcttgatagctatgtgagcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaattacttggt |
41077772 |
T |
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| Q |
219 |
gtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatggagattataattccattttgctgcagcatcagtttagctgctctggt |
318 |
Q |
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| T |
41077773 |
gtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatggagattataattccattttgctgcagcatcagtttagctgctctggt |
41077872 |
T |
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| Q |
319 |
gacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttttacttcataggttttgtatgcagaatcatgagatgtgtgcctata |
418 |
Q |
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| T |
41077873 |
gacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttttacttcataggttttgtatgcagaatcatgagatgtgtgcctata |
41077972 |
T |
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| Q |
419 |
ttgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccccttttatgcatgtcttcta |
492 |
Q |
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| T |
41077973 |
ttgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccccttttatgcatgtcttcta |
41078046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 1217178 - 1217228
Alignment:
| Q |
400 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatg |
450 |
Q |
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| T |
1217178 |
catgagatgtgtgcttgaattttattatgctatgctttaattgattctatg |
1217228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 4132091 - 4132034
Alignment:
| Q |
400 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatgttttcat |
457 |
Q |
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| T |
4132091 |
catgagatatgtgcttgaattgtattgtgctatgctttaatcgattctatgttatcat |
4132034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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