View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_23 (Length: 517)
Name: NF16561_low_23
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 40802416 - 40801916
Alignment:
| Q |
1 |
actttggttcagaaggaagaggaggaatttgccgacgcttctaagtgtgagagtgttgtttcaccacagttaccaaatgtgaaggttctaaacaacagtg |
100 |
Q |
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| T |
40802416 |
actttggttcagaaggaagaggaggaatttgccgacgcttctaagtgtgagagtgttgtttcaccacagttaccaaatgtgaaggttctaaacaacagtg |
40802317 |
T |
|
| Q |
101 |
aaagtaatacaacgtctgcaaacaaagtagttgttcgtagtcataaatgtgaaataaaagctaatcggaagaagatgaaagtaagctgctttaccattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40802316 |
aaagtaatacaacgtctgcaaacaaagtagttgttcgtagtcataaatgtgaaataaaagctaatcggaagaagatgaaagtaagctgctttaccattca |
40802217 |
T |
|
| Q |
201 |
ttcttctcataatgttcttgttctgttatttcatactgttcattgtttattcattttatgtatgagtgatctgctgaacctgattttcttaatacagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40802216 |
ttcttctcataatgttcttgttctgttatttcatactgttcattgtttattcattttatgtatgagtgatctgctgaacctgattttcttaatacagttt |
40802117 |
T |
|
| Q |
301 |
tggtactttggtctcaggtagactggacgccggagctgcacaaaaaatttgtgaaggcagtggagcaactaggcattgatcacgctattccttctcgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40802116 |
tggtactttggtctcaggtagactggacgccggagctgcacaaaaaatttgtgaaggcagtggagcaactaggcattgatcacgctattccttctcgaat |
40802017 |
T |
|
| Q |
401 |
attggatctaatgaaagtggagggattgacaaggcataatgtggcaagccatcttcaggttataatctaccttcccacagtttccaaaactatttcaata |
500 |
Q |
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| T |
40802016 |
attggatctaatgaaagtggagggattgacaaggcataatgtggcaagccatcttcaggttataatctaccttcccacagtttccaaaactatttcaata |
40801917 |
T |
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| Q |
501 |
c |
501 |
Q |
| |
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| |
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| T |
40801916 |
c |
40801916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 314 - 460
Target Start/End: Original strand, 4643836 - 4643982
Alignment:
| Q |
314 |
tcaggtagactggacgccggagctgcacaaaaaatttgtgaaggcagtggagcaactaggcattgatcacgctattccttctcgaatattggatctaatg |
413 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||||| |
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| T |
4643836 |
tcaggtagactggacagctgagctgcacaaaaaatttgtgaaggcagtggaacaactaggtattgatcaagccattccttctcgtatattggagttaatg |
4643935 |
T |
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| Q |
414 |
aaagtggagggattgacaaggcataatgtggcaagccatcttcaggt |
460 |
Q |
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| T |
4643936 |
aaagtcgacggtttgacaaggcataatgtggcaagccatcttcaggt |
4643982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 4643402 - 4643430
Alignment:
| Q |
157 |
aaagctaatcggaagaagatgaaagtaag |
185 |
Q |
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| T |
4643402 |
aaagctaatcggaagaagatgaaagtaag |
4643430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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