View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_25 (Length: 512)
Name: NF16561_low_25
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 179 - 497
Target Start/End: Original strand, 42290447 - 42290755
Alignment:
| Q |
179 |
aaacactacacaccaaaatttgaagaaaacaaaatgagattcaagggaacacattttccaggcttggctttcttgattttggtatgctattgcttaggat |
278 |
Q |
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| T |
42290447 |
aaacactacacaccaaaatttgaagaaaacaaaatgagattcaagggaacacattttccaggcttggctttcttgattttggtatgct------taggat |
42290540 |
T |
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| Q |
279 |
ttgacgccgtttattgctacaatcgaccaccgcctcgtaaaaccatttttgttcctcacgatcatgatgactcatcgccacaacaggtacatttcttttc |
378 |
Q |
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| T |
42290541 |
ttgacgccgtttattgctacaatcgaccaccgcctcgtaaaaccatttttgttcctcacgatcatgatgactcatcgccacaacaggtacatttcttttc |
42290640 |
T |
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| Q |
379 |
tgctttaaaatcattaaatgcttcacgacaaaaaactgttcaatcgtattcattgttataaattttctattaaataaatcatatcatgtgctgcctctca |
478 |
Q |
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| T |
42290641 |
tgctttaaaatcattaaatgcttcacgacaaaaaactgttcaatcgtattcattgttataaattttctat----taaatcatatcatgtgctgcctctca |
42290736 |
T |
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| Q |
479 |
aactttcatttaccatata |
497 |
Q |
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||||||||||||||||||| |
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| T |
42290737 |
aactttcatttaccatata |
42290755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 42290304 - 42290390
Alignment:
| Q |
80 |
atttccgggggaagttgggatttcatttgtgtataaatatagtgctgctctcgtcttcttccttcaacttcaacctttatcccttct |
166 |
Q |
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| T |
42290304 |
atttccgggggaagttggtatttcatttgtgtataaatatagtgctgctctcgtcttcttccttcaacttcaacctttatcccttct |
42290390 |
T |
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