View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_26 (Length: 510)
Name: NF16561_low_26
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 3094410 - 3093909
Alignment:
| Q |
1 |
ccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094410 |
ccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccac |
3094311 |
T |
|
| Q |
101 |
catgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094310 |
catgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgc |
3094211 |
T |
|
| Q |
201 |
tgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094210 |
tgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatg |
3094111 |
T |
|
| Q |
301 |
catctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattg |
400 |
Q |
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| T |
3094110 |
catctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattg |
3094011 |
T |
|
| Q |
401 |
gccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttg |
500 |
Q |
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| T |
3094010 |
gccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttg |
3093911 |
T |
|
| Q |
501 |
ct |
502 |
Q |
| |
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|| |
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| T |
3093910 |
ct |
3093909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 3085564 - 3085078
Alignment:
| Q |
1 |
ccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccac |
100 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3085564 |
ccaggagaatagttgaaggtagaaccgtcgattacgcgcaatgcatcgacaccaagaaccttataatcattatcaacaaccctaccaacttgacaaccac |
3085465 |
T |
|
| Q |
101 |
catgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgc |
200 |
Q |
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| T |
3085464 |
catgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgc |
3085365 |
T |
|
| Q |
201 |
tgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatg |
300 |
Q |
| |
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|||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3085364 |
aatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatg |
3085265 |
T |
|
| Q |
301 |
catctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattg |
400 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
3085264 |
catcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattg |
3085165 |
T |
|
| Q |
401 |
gccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggctt |
487 |
Q |
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| || | | ||| || ||||||||||||||||| || ||||||||||| ||||| || |||||| ||||||||||||||||||||| |
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| T |
3085164 |
gacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggctt |
3085078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
97 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
146 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
75 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
119 |
Q |
| |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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