View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_27 (Length: 507)
Name: NF16561_low_27
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 38378189 - 38378082
Alignment:
| Q |
13 |
aatatgttcgcattatcttttcttttttcttcttgtttaatattttgggcaagatttgtcactcacatcaacaaaaatatgtttcaaattaaatgatata |
112 |
Q |
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| T |
38378189 |
aatatgttcgtattatcttttcttttttcttcttgtttaatattttgggcaagatttgtcactcacatcaacaaaaatatgtttcaaattaaatgatata |
38378090 |
T |
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| Q |
113 |
gaatttta |
120 |
Q |
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| T |
38378089 |
gaatttta |
38378082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 490
Target Start/End: Complemental strand, 38377960 - 38377745
Alignment:
| Q |
273 |
tcaaatatttgctattggagagtggtgaggagtaactaagaagcggggatttattagattttttcatagagttaaatta-nnnnnnnaagaatcaaaagt |
371 |
Q |
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| T |
38377960 |
tcaaatatttgctattggagagtggttaggagtaactaagaagcgggga-ttattagattttttcatagagttaaattatttttttgaagaatcaaaaat |
38377862 |
T |
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| Q |
372 |
ggattatattaacaacggcagcagctcacctttagtataaggtataagatgtgctcaagaggtcgccc----nnnnnnnnnntacaagctgtcactgtac |
467 |
Q |
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| T |
38377861 |
gaattatattaa------cagcagttcacctttaatataaggtataaggtgtgctcaagaggtcgcccaaaaaaaaaaaaaatacaagctgtcactgtac |
38377768 |
T |
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| Q |
468 |
aaattcataaacaagtgtcaatc |
490 |
Q |
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| T |
38377767 |
aaattcataaacaggtgtcaatc |
38377745 |
T |
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