View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_28 (Length: 503)
Name: NF16561_low_28
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 28 - 468
Target Start/End: Original strand, 2672219 - 2672659
Alignment:
| Q |
28 |
tgagtctcaccgatagccgaccaaaagggattcattgtatatcccaaagtgagaagagcataacacttgtcaagcaaaggtgggcactctataacataag |
127 |
Q |
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| T |
2672219 |
tgagtctcaccgatagccgaccaaaagggattcattgtatatcccaaagtgagaagaacataacacttgtcaagcaaaggtgggcactctataacataag |
2672318 |
T |
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| Q |
128 |
ccaaacaagatagctgacgtgtcactcaagtgacacgtgtatcacaaccaaggccaaacaatccttacttactatttctatgtataaattgttcaatttt |
227 |
Q |
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| T |
2672319 |
ccaaacaagatagctgacgtgtcactcaagtgacacgtgtatcacaaccaaggccaaacaatccttacttactatttctatgtataaattgttcaatttt |
2672418 |
T |
|
| Q |
228 |
aattgattagtattggcaaacattttagtaacatctacgatcactcctttcacaatcacatttgaataatccaatctaattaactttagctacctggtaa |
327 |
Q |
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| T |
2672419 |
aattgattagtattggcaaacattttagtaacatctacgatcactcctttcacaatcacatttgaataatccaatctaattaactttagctacctggtaa |
2672518 |
T |
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| Q |
328 |
cttacttaacttttcattagtcaattgcaatctgctgaaaacgtttgtgttgtgtatccgttagacnnnnnnntaatactactaatgcatgcatttagct |
427 |
Q |
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| T |
2672519 |
cttacttaacttttcatcagtcaattgcaatctgctgaaaacgtttgtgttgtgtatccgttagacaaaaaaataatactactaatgcatgcatttagct |
2672618 |
T |
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| Q |
428 |
atatatagttcatcacgtgttactttaaggtgttaatatat |
468 |
Q |
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| T |
2672619 |
atatatagttcatcacgtgttactttgaggtgttaatatat |
2672659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 2690149 - 2690288
Alignment:
| Q |
85 |
gcataacacttgtcaagcaaaggtgggcactct-ataacataagccaaacaagatagctgacgtgtcactcaagtgacacgtgtatcacaaccaaggcca |
183 |
Q |
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| T |
2690149 |
gcataacacttgtcaagcaagggtgtgcactgtgataacataagccaaactagcattctgacgtgtcactcaaatgacacgtgctgcacaaccaagacca |
2690248 |
T |
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| Q |
184 |
aacaatccttacttactatttctatgtataaattgttcaatttt |
227 |
Q |
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| T |
2690249 |
aacaaac----cgtaccattcctatgtataaattgttcaatttt |
2690288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 2690353 - 2690455
Alignment:
| Q |
266 |
gatcactcctttcacaatcacatttgaataatccaatc----taattaactttagctacctggtaacttacttaacttttcattagtcaattgcaatctg |
361 |
Q |
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| T |
2690353 |
gatcactccttttccaatcacatttgaataattcaatccaattaattaactttaggtatctggtaactt----aacttttcattagtctattgcaatctg |
2690448 |
T |
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| Q |
362 |
ctgaaaa |
368 |
Q |
| |
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||||||| |
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| T |
2690449 |
ctgaaaa |
2690455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 449
Target Start/End: Original strand, 2690454 - 2690505
Alignment:
| Q |
402 |
aatactactaatgcatgcatttagc----tatatatagttcatcacgtgtta |
449 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2690454 |
aataatactaatgcatgcatttagctagctatatatagttcatcacgtgtta |
2690505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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