View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_35 (Length: 477)
Name: NF16561_low_35
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 6138482 - 6138933
Alignment:
| Q |
17 |
aatttattgttaaagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138482 |
aatttattgttaaagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgca |
6138581 |
T |
|
| Q |
117 |
ctcttccttcnnnnnnncatactcatcaagacaacgtcaacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgc |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138582 |
ctcttccttctttttttcatactcatcaagacaacgtcaacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgc |
6138681 |
T |
|
| Q |
217 |
tgctcttgcacgtgaaggaccaagtacttatggtactacttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagat |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138682 |
tgctcttgcacgtgcaggaccaagtacttatggtactacttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagat |
6138781 |
T |
|
| Q |
317 |
gatcgtccaattccatatcataatgcacctcattctgattttctcactgagcctctcgatattcctagcatgttacgtcgtcaagagcatcctaggacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6138782 |
gatcgtccaattccatatcataatgcacctcattctgattttctcactgagcctctcgatattcctagcatgttatgtcgtcaagagcatcctaggacaa |
6138881 |
T |
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| Q |
417 |
acttcaatataggaagacacgatccttctcctgcttctagatccgcctatgc |
468 |
Q |
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| T |
6138882 |
acttcaacataggaagacacgatccttctcctgcttctagatccgcctatgc |
6138933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 33802968 - 33802873
Alignment:
| Q |
29 |
aagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttcct |
124 |
Q |
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|||||||| ||||| || || |||| | |||||||||||||||| |||||||||||| ||||||| | | ||| |||||||||||||||||| |
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| T |
33802968 |
aagagaagtagatcgcctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcct |
33802873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 6126115 - 6126185
Alignment:
| Q |
17 |
aatttattgttaaagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcaca |
87 |
Q |
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|||| |||||||||||||| |||||||| || |||| | |||||||||||||||| |||||||||||| |
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| T |
6126115 |
aattcattgttaaagagaaatagatcacccgatccattcattagaggtgaaacttctaatcaaggttcaca |
6126185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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