View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_37 (Length: 453)

Name: NF16561_low_37
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_37
NF16561_low_37
[»] chr8 (5 HSPs)
chr8 (320-386)||(8697630-8697696)
chr8 (320-386)||(10646847-10646913)
chr8 (320-386)||(40486190-40486256)
chr8 (320-386)||(45278433-45278499)
chr8 (320-348)||(41307731-41307759)
[»] chr7 (2 HSPs)
chr7 (320-386)||(25059865-25059931)
chr7 (320-386)||(2911280-2911346)
[»] chr3 (4 HSPs)
chr3 (320-386)||(12094837-12094903)
chr3 (320-386)||(44277187-44277253)
chr3 (320-377)||(19911803-19911860)
chr3 (355-386)||(40931910-40931941)
[»] chr1 (3 HSPs)
chr1 (320-386)||(3943315-3943381)
chr1 (324-386)||(9588929-9588991)
chr1 (320-386)||(13984724-13984789)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 8697696 - 8697630
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  8697696 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttcggttatcaa 8697630  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 10646847 - 10646913
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  10646847 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttcggttatcaa 10646913  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 40486256 - 40486190
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  40486256 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttcggttatcaa 40486190  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 45278499 - 45278433
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||    
T  45278499 tatgtattgaaaatagcatgccaatataattttttttcaacttctcttatcatgcttcggttatcaa 45278433  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 41307759 - 41307731
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaa 348  Q
    |||||||||||||||||||||||||||||    
T  41307759 tatgtattgaaaatagcatgccaatacaa 41307731  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 25059931 - 25059865
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  25059931 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttcggttatcaa 25059865  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 2911346 - 2911280
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||    
T  2911346 tatgtattgaaaatagcatgccaatataattttttttcaacttctcttatcatgcttcggttatcaa 2911280  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 12094837 - 12094903
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||    
T  12094837 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttgtcatgcttcggttatcaa 12094903  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 44277253 - 44277187
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||    
T  44277253 tatgtattgaaaatagcatgccaatataattttttttcaacttctcttatcatgcttcggttatcaa 44277187  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 19911803 - 19911860
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttc 377  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  19911803 tatgtattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttc 19911860  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 386
Target Start/End: Original strand, 40931910 - 40931941
Alignment:
Q  355 ttcaacttctcttatcatgcttcggttatcaa 386  Q
    ||||||||||||||||||||||||||||||||    
T  40931910 ttcaacttctcttatcatgcttcggttatcaa 40931941  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 3943315 - 3943381
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||    
T  3943315 tatgtattgaaaatagcatgccaatataattttttttcaacttctcttatcatgcttcggttatcaa 3943381  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 9588929 - 9588991
Alignment:
Q  324 tattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  9588929 tattgaaaatagcatgccaatacaattttttttcaacttctcttatcatgcttcggttatcaa 9588991  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 13984789 - 13984724
Alignment:
Q  320 tatgtattgaaaatagcatgccaatacaaaaacaattcaacttctcttatcatgcttcggttatcaa 386  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  13984789 tatgtattgaaaatagcatgccaatacaattttt-ttcaacttctcttatcatgcttcggttatcaa 13984724  T

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