View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_low_39 (Length: 435)
Name: NF16561_low_39
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 120 - 316
Target Start/End: Complemental strand, 53940962 - 53940765
Alignment:
| Q |
120 |
aaaaaagaagggaaggatcctcaaaccgaatacccaaatgagagtgaagctacaccnnnnnnn-gtccaagtgcaatctttgaaaacatgatccaaatct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53940962 |
aaaaaagaagggaaggatcctcaaaccgaatacccaaatgagagggacgctacaccttttttttgtccaagtgcaatctttgaaaacatgatccaaatct |
53940863 |
T |
|
| Q |
219 |
tcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctttcgagttaatttaattcttaccgagacatcatta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53940862 |
tcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctttcgagttaatttaattcttaccgagacatcatta |
53940765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 53941241 - 53941138
Alignment:
| Q |
1 |
caggcatttccatcaaaacaagacttgccatgagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaaggatgattaagatatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53941241 |
caggcatttccatcaaaacaagacttgccatgagcaaactaaatgtcatagcataaagaaagaacatacgagatgatatctaaggatgattaagatatga |
53941142 |
T |
|
| Q |
101 |
catg |
104 |
Q |
| |
|
|||| |
|
|
| T |
53941141 |
catg |
53941138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 53940398 - 53940307
Alignment:
| Q |
325 |
cattatatattcaatgatttgtatgattttccattaactattgacaaacacaaggcttggaattaattcatcatcatgggagattttaattt |
416 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53940398 |
cattatatattcaatgatttgtatggttttccattaactattgacaaacacaaggcttggaattaattcatcatcttgggagattttaattt |
53940307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 24200031 - 24200145
Alignment:
| Q |
52 |
cataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaaggtataaaaaagaagggaaggatcctcaaaccgaata |
151 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||| ||| |||||||||| |||| ||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
24200031 |
cataaagaaagaacatatgagatgacatctaatgatgaacgagaaatgacatgtttaagctaagatat-gaaaggaagggaaggatcctcaaatcgaacc |
24200129 |
T |
|
| Q |
152 |
cccaaatgagagtgaa |
167 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
24200130 |
cccaaagaagagtgaa |
24200145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 5554361 - 5554230
Alignment:
| Q |
32 |
gagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaaggtataaaaaagaaggg |
131 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||||| |||| || |||||| ||||| | | | || |||||||||||||||| ||| ||| || |||| |
|
|
| T |
5554361 |
gagcaaaccaaataccataacataaagaaagaacatatgagacgacatctaatgatgaatgacaaataacatgttcaagccaagatatgaaagag-aggg |
5554263 |
T |
|
| Q |
132 |
aaggatcctcaaaccgaatacccaaatgagagt |
164 |
Q |
| |
|
||| |||||| || |||| ||| ||| |||||| |
|
|
| T |
5554262 |
aagaatcctctaatcgaacacctaaaggagagt |
5554230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 21112828 - 21112728
Alignment:
| Q |
15 |
aaaacaagacttgccatgagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaa |
114 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||| ||||||||||||| ||| ||||||||||||| ||||| | ||| ||||| | |||||| ||| |
|
|
| T |
21112828 |
aaaacaagacttattatgagcaaaccaaataccataacataaagaaagaatatatcagatgatatctaatgatgaatgagaaatgacctattcaagtcaa |
21112729 |
T |
|
| Q |
115 |
g |
115 |
Q |
| |
|
| |
|
|
| T |
21112728 |
g |
21112728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University