View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_4 (Length: 787)
Name: NF16561_low_4
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 22 - 773
Target Start/End: Original strand, 43109821 - 43110579
Alignment:
| Q |
22 |
aggaacattttatttggagagtttttacaatattttatcactatagttt-gtgcctataaa-gcgcataaatatttaatgcatgt---------gtttga |
110 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||| |
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| T |
43109821 |
aggaactttttatttggagattttttacaatattttatcactatagttttgtgcctataaaagcgtataaatatttaatgcatgtcatgtgtgtgtttga |
43109920 |
T |
|
| Q |
111 |
tttgtaagaaaacgaagtattagacgagacaaatatatttgtccaatgtttgatttaaaaaagcaattaacaaaggacaacacataataaaacgtgatgc |
210 |
Q |
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|||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||| |
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| T |
43109921 |
tttgtaagaaaatgaagtattggacgggacaaaaatatttgtccaatgtttgatttgaaaaagcaattaataaaggacaacacagaataaaaagctatgc |
43110020 |
T |
|
| Q |
211 |
actagacaactttcccnnnnnnnngttaaaattgaattcaaaataaaattgaaaagtatttgaacannnnnnncacaataaagttatatcgtttcattca |
310 |
Q |
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| T |
43110021 |
actagacaactt-cccctttttttgttaaaattgaaatcaaaataaaattgaaaagtatttgaacatttttttcacaataaagttatatcgtttcattca |
43110119 |
T |
|
| Q |
311 |
tcaaatgggaaaaatacaattaatttcaaaattatctttattgggaaattatgtattcaattaatttctctcctcacattagattagatagatatacaca |
410 |
Q |
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| T |
43110120 |
tcaaatgggaaaaatacaattaatttcaaaattatctttatagggaaattatgtattcaattaatttctctcctcacattagattagatagatatacaca |
43110219 |
T |
|
| Q |
411 |
ccttgcacatgtttggaggacacagattacatttgtgaggaggcttattgagatcatggtaaggcaaaattctcaaccttccttcatcaacataacctgg |
510 |
Q |
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| T |
43110220 |
ccttgcacatgtttggaggacacagattacatttgtgaggaggcttattgagatcatggtaaggcaaaattctcaaccttccttcatcaacataacctgg |
43110319 |
T |
|
| Q |
511 |
attagtgttaatctctgagaaacatcccctaataccaaaatgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacac |
610 |
Q |
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| T |
43110320 |
attagtgttaatctctgagaaacattccctaataccaaaatgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacac |
43110419 |
T |
|
| Q |
611 |
ctgaaaataaaaagattataaaatgcaacaatataaattatctctcctctagtttttcttctaaatactatnnnnnnnnnnnnnnnnnnnnnnggtagag |
710 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
43110420 |
ctgaaaataaaaagattataaaatgcaacaatataatttatctctcctctagtttttcttgtaaatactataaaacaaaaataaatgaaaaaaggtagag |
43110519 |
T |
|
| Q |
711 |
ggacaaaatggtgtatacaatataccctaaagtataggctgctttaatggaagggattattct |
773 |
Q |
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| T |
43110520 |
ggacaaaatggtgtatac---ataccctaaagtataggctgctttaatggaagggattattct |
43110579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 408 - 615
Target Start/End: Original strand, 26314678 - 26314888
Alignment:
| Q |
408 |
acaccttgcacatgtttggaggacacagattacatttgtgaggaggcttattgagatcatggtaaggcaaaattctcaaccttccttc---atcaacata |
504 |
Q |
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|||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| | |||||||||||||||| |||||||| ||||||||| |
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| T |
26314678 |
acaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatagaaaggcaaaattctcaatcttccttcttcatcaacata |
26314777 |
T |
|
| Q |
505 |
acctggattagtgttaatctctgagaaacatcccctaataccaaaatgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaa |
604 |
Q |
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||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26314778 |
acctggattagtgttaatctccgagaaacattccctaattccaaagtgctttagaattgtctcaatgaaaaatgtgtttgcatcacttacaatcctcaaa |
26314877 |
T |
|
| Q |
605 |
tcacacctgaa |
615 |
Q |
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| T |
26314878 |
tcacacctgaa |
26314888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 611
Target Start/End: Original strand, 5272353 - 5272513
Alignment:
| Q |
454 |
cttattgagatcatggtaaggcaaaattctcaaccttccttc---atcaacataacctggattagtgttaatctctgagaaacatcccctaataccaaaa |
550 |
Q |
| |
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|||||||| |||||||||||| ||||||| | |||||||| || ||||||||| ||||||| ||||||||||||||| ||| | ||||| || ||| |
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| T |
5272353 |
cttattgaaatcatggtaaggtgaaattctaactcttccttcttgattaacataaccaggattagagttaatctctgagaagcattcactaattcccaaa |
5272452 |
T |
|
| Q |
551 |
tgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacacc |
611 |
Q |
| |
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||||||| ||| || |||||| ||||| | || |||||||| ||||||||||||||||||| |
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| T |
5272453 |
tgcttcaaaatagtttcaatgtaaaacatattagcatcactaacaatcctcaaatcacacc |
5272513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 611
Target Start/End: Complemental strand, 5250208 - 5250048
Alignment:
| Q |
454 |
cttattgagatcatggtaaggcaaaattctcaaccttccttc---atcaacataacctggattagtgttaatctctgagaaacatcccctaataccaaaa |
550 |
Q |
| |
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|||||||| |||||||||||| |||||||| || ||||||| || ||||||||| ||||||||||||||||| | ||| || | || || || ||| |
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| T |
5250208 |
cttattgaaatcatggtaaggtaaaattcttaatcttccttgttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcccaaa |
5250109 |
T |
|
| Q |
551 |
tgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacacc |
611 |
Q |
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| T |
5250108 |
ttcttcaaaattgtttcaatgaaaaatgtattagcatcactaacaatcctcaaatcacacc |
5250048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 499 - 611
Target Start/End: Complemental strand, 5269380 - 5269268
Alignment:
| Q |
499 |
aacataacctggattagtgttaatctctgagaaacatcccctaataccaaaatgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatc |
598 |
Q |
| |
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||||||||| ||||| ||||||||||| ||||| ||| | ||||| || |||||||||| |||||| |||||||||| ||| || ||||| || |||||| |
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| T |
5269380 |
aacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatgcttcaaaattgtgtcaatgaaaatcgtattagcatcgctaacaatc |
5269281 |
T |
|
| Q |
599 |
ctcaaatcacacc |
611 |
Q |
| |
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||||||||||||| |
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| T |
5269280 |
ctcaaatcacacc |
5269268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 611
Target Start/End: Original strand, 5276332 - 5276492
Alignment:
| Q |
454 |
cttattgagatcatggtaaggcaaaattctcaaccttccttc---atcaacataacctggattagtgttaatctctgagaaacatcccctaataccaaaa |
550 |
Q |
| |
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|||||||| |||||||||||| ||||||| | |||||||| || ||||||||| ||||||||||||||||| | ||| || | || || || ||| |
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| T |
5276332 |
cttattgaaatcatggtaaggtgaaattctaactcttccttcttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaa |
5276431 |
T |
|
| Q |
551 |
tgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacacc |
611 |
Q |
| |
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||||||| ||| || |||||| ||||| | || |||||||| ||||||||||||||||||| |
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| T |
5276432 |
tgcttcaaaatagtttcaatgtaaaacatattagcatcactaacaatcctcaaatcacacc |
5276492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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