View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_46 (Length: 415)
Name: NF16561_low_46
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 6543416 - 6543029
Alignment:
| Q |
18 |
ctttttctatttcactttaaccaatattcatcaaatccatccatgtcttctactaccaatcctcct---------tacaatgtgtacttgggtttctgtg |
108 |
Q |
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| T |
6543416 |
cttttgctatttcactttaaccaatattcatcaaatccatccatgtcttctactaccaatccaaagagaaagagctacgacgtgtacttgggtttctgtg |
6543317 |
T |
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| Q |
109 |
atgaagatgcgggttcttttgctttggaactctatacagctcttagttcagaagctggaatcatagttttctgggacaatgagaggattggaagtggaga |
208 |
Q |
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| T |
6543316 |
atgaagatgcgggttcttttgctttggaactctatacagctcttagttcacaagctgaaatcattgttttctgggacgattacaggattggatttggaga |
6543217 |
T |
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| Q |
209 |
tcaagaaataccaacatccgtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaa |
308 |
Q |
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| T |
6543216 |
tcaagaagtaccaacctcggtgctgaatgtgattgcagattccaaagttgttgtagtcatattatcaaagaattatacgcattctagatggtgtcttcaa |
6543117 |
T |
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| Q |
309 |
gaactggagaaaataactgagtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattcccccagta |
396 |
Q |
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| T |
6543116 |
gaattggagaaaataacccagtgttaccgaaccaaagatggtcccgttgttttacctgtgttctatgatggtgtccattcccccagta |
6543029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 228 - 393
Target Start/End: Original strand, 6737583 - 6737748
Alignment:
| Q |
228 |
gtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactg |
327 |
Q |
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| T |
6737583 |
gtgctgaatgtgattgaagattgcaaagttgttgtagtcgtattatcaaagaattatactaattctagatggtgtcttcaagaattggagaaaataactg |
6737682 |
T |
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| Q |
328 |
agtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattccccca |
393 |
Q |
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| T |
6737683 |
agtgttaccgaactaaagatggtcccattgttttacctttgttctatgatggtgtctattccccca |
6737748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 6736057 - 6736141
Alignment:
| Q |
134 |
ggaactctatacagctcttagttcagaagctggaatcatagttttctgggacaatgagaggattggaagtggagatcaagaaata |
218 |
Q |
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| T |
6736057 |
ggaactctatacggctcttagttcagaagttggaatcattgttttctgggacaatgagaggattggaagtggagatcgagaaata |
6736141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 6503226 - 6503166
Alignment:
| Q |
265 |
tcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataac |
325 |
Q |
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| T |
6503226 |
tcatattttcaaagaattatactaaatcaagatggtgtcttcaagaattggagaaaataac |
6503166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 6524137 - 6523998
Alignment:
| Q |
84 |
tacaatgtgtacttgggtttctgtgatgaagatgcgggttcttttgctttggaactctatacagctcttagttcagaagctggaatcatagttttctggg |
183 |
Q |
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| T |
6524137 |
tacaatgtgtacttgagtttttgcaacaaagacgcgggttcttttgctctgcaactctacacggctcttagttcagaggctagagtttctgttttctggg |
6524038 |
T |
|
| Q |
184 |
acaatgagaggattggaagtggagatcaagaaataccaac |
223 |
Q |
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| T |
6524037 |
acaatgcaaggcttggaagtggagatcgacaaatatcaac |
6523998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 6506730 - 6506673
Alignment:
| Q |
268 |
tattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataac |
325 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
6506730 |
tattttcaaagaattattttaattcaagatggtgtcttcaagaattggagaaaataac |
6506673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 338
Target Start/End: Complemental strand, 6594125 - 6594015
Alignment:
| Q |
228 |
gtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactg |
327 |
Q |
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| T |
6594125 |
gtgctgaatgtaattcaagactgcaaagtcgctgtagtcttgttttcaaaaaattatactaattcaagttcgtgtatacaagaattggagaaaataactc |
6594026 |
T |
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| Q |
328 |
agtgttaccga |
338 |
Q |
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| T |
6594025 |
agtgttgccga |
6594015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 333
Target Start/End: Original strand, 6646090 - 6646249
Alignment:
| Q |
174 |
gttttctgggacaatgagaggattggaagtggagatcaagaaataccaacatccgtgctgaatgtcattgaacattgcaaacttggtgtagtcatattat |
273 |
Q |
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||||||||||| |||||| | ||||||| || |||| || ||||||||| || | ||||||| || ||| |||||||| ||| |||| | |||| | |
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| T |
6646090 |
gttttctgggatgatgagaagcttggaagcggtgatcgaggaataccaacctcaattttgaatgttatagaagattgcaaagttgctgtaatagtatttt |
6646189 |
T |
|
| Q |
274 |
caaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactgagtgtt |
333 |
Q |
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| T |
6646190 |
caagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt |
6646249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 6747960 - 6748019
Alignment:
| Q |
273 |
tcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactgagtgt |
332 |
Q |
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| T |
6747960 |
tcaaagaaatatactgaatcaagctggtgtcttcaggaattggagaaaataactgagtgt |
6748019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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