View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_47 (Length: 413)

Name: NF16561_low_47
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_47
NF16561_low_47
[»] chr8 (6 HSPs)
chr8 (1-209)||(30542053-30542259)
chr8 (259-397)||(30541865-30542003)
chr8 (263-401)||(11256211-11256348)
chr8 (263-325)||(32475594-32475656)
chr8 (72-174)||(32475404-32475506)
chr8 (260-383)||(13318040-13318163)
[»] chr6 (2 HSPs)
chr6 (262-361)||(12250915-12251014)
chr6 (263-310)||(1055718-1055765)
[»] chr2 (6 HSPs)
chr2 (266-361)||(26159661-26159756)
chr2 (266-348)||(15672266-15672348)
chr2 (266-369)||(9145608-9145711)
chr2 (263-305)||(36781073-36781115)
chr2 (287-348)||(9493742-9493803)
chr2 (262-303)||(34514355-34514396)
[»] chr4 (9 HSPs)
chr4 (266-348)||(26698102-26698184)
chr4 (260-401)||(31160905-31161047)
chr4 (287-367)||(55416901-55416981)
chr4 (270-360)||(4492872-4492962)
chr4 (262-348)||(48825348-48825434)
chr4 (266-313)||(53146990-53147037)
chr4 (268-312)||(39809851-39809895)
chr4 (333-372)||(21162574-21162613)
chr4 (262-305)||(23636628-23636671)
[»] chr1 (6 HSPs)
chr1 (262-348)||(33677689-33677775)
chr1 (262-360)||(44962135-44962233)
chr1 (287-348)||(52243437-52243498)
chr1 (279-349)||(46232348-46232418)
chr1 (262-347)||(24599021-24599106)
chr1 (266-303)||(41038644-41038681)
[»] chr7 (4 HSPs)
chr7 (266-361)||(6561132-6561227)
chr7 (271-374)||(34257584-34257687)
chr7 (270-336)||(23027962-23028028)
chr7 (262-344)||(21636227-21636309)
[»] scaffold0519 (1 HSPs)
scaffold0519 (263-401)||(9048-9185)
[»] chr3 (3 HSPs)
chr3 (284-365)||(3452255-3452336)
chr3 (317-382)||(21393945-21394010)
chr3 (284-348)||(39978327-39978391)
[»] chr5 (6 HSPs)
chr5 (269-383)||(15259061-15259175)
chr5 (262-348)||(35562616-35562701)
chr5 (261-370)||(36274857-36274966)
chr5 (284-383)||(513425-513524)
chr5 (262-313)||(27626151-27626202)
chr5 (263-401)||(25714547-25714682)
[»] scaffold0263 (1 HSPs)
scaffold0263 (90-165)||(21802-21877)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30542259 - 30542053
Alignment:
Q  1 aaacatatggtaacatctcattgcgtttccaaacacacgtttaatatcacaaaagattcnnnnnnnnnnnnaagctaaaatgaaacatgttaatcaaaca 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||    
T  30542259 aaacatatggtaacatcccattgcgtttccaaacacacgtttaatatcacaaaagattcgttttttta---aagctaaaatgaaacatattaatcaaaca 30542163  T
Q  101 tcttagtctttggagcacaagaagttccagaagagaactaaggaagaaaaatatttgttacatcaaggaatc-aagaaaagtcaaagcgataaagccaca 199  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  30542162 tcttagtctttggagcacaagaagttccagaagaaaactaaggaagaaaaatatttgttacatcaaggaatcaaaaaaaagtcaaagcgataaagccaca 30542063  T
Q  200 gagcagacac 209  Q
    ||||||||||    
T  30542062 gagcagacac 30542053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 259 - 397
Target Start/End: Complemental strand, 30542003 - 30541865
Alignment:
Q  259 tagaaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagt 358  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30542003 tagaagggggttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttccctataagt 30541904  T
Q  359 tgatgaatagagtctcccttttgttataaaaactctagc 397  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30541903 tgatgaatagagtctcccttttgttataaaaactctagc 30541865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 401
Target Start/End: Complemental strand, 11256348 - 11256211
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgat 362  Q
    |||||||||||||||| ||| |||||| |||||| ||| |||||||||||| | ||||||||| | || || | ||||||||||||  ||||||  ||||    
T  11256348 aggggattaagccactgcatctgataagtaaaagtaaagttaggatgatttgtcttcaaccaccaaaaagacttgagcttaattttatctataaactgat 11256249  T
Q  363 gaatagagtctcccttttgttataaaaactctagcattc 401  Q
     |||||| ||||| || ||||  ||| ||||||||||||    
T  11256248 taatagaatctcctttatgtt-gaaagactctagcattc 11256211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 32475594 - 32475656
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccac 325  Q
    |||||||| |||||| ||||||||||||| ||||| ||||||||||||||| | |||||||||    
T  32475594 aggggattgagccaccacatatgataattgaaagcgaaattaggatgatttgtcttcaaccac 32475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 32475404 - 32475506
Alignment:
Q  72 aagctaaaatgaaacatgttaatcaaacatcttagtctttggagcacaagaagttccagaagagaactaaggaagaaaaatatttgttacatcaaggaat 171  Q
    |||||||||||||| || |||| ||| ||||||| ||||   || | |||||||  || ||||||||||||||| | |||||||||||||| |||| |||    
T  32475404 aagctaaaatgaaatatattaaccaatcatcttaatcttgatagtataagaagtgacataagagaactaaggaaaagaaatatttgttacaacaagaaat 32475503  T
Q  172 caa 174  Q
    |||    
T  32475504 caa 32475506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 13318040 - 13318163
Alignment:
Q  260 agaaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagtt 359  Q
    ||||| |||||||||||| |  | || |||||||||||||||||||||||||||     || |||| |||| |||||  ||||||||||  || |||| |    
T  13318040 agaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagccaccagaatgattgttgcttaattttgtctttaagct 13318139  T
Q  360 gatgaatagagtctcccttttgtt 383  Q
    |||||||||| | ||| |||||||    
T  13318140 gatgaatagaatttccattttgtt 13318163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 361
Target Start/End: Complemental strand, 12251014 - 12250915
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttga 361  Q
    |||||||||||||||| |||| ||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||||||| |||  ||| |||||||    
T  12251014 aaggggattaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaagttga 12250915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 1055765 - 1055718
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattaggatga 310  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||    
T  1055765 aggggattaagccaccacatgtaataattaaaagcaaaattaggatga 1055718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 26159661 - 26159756
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttga 361  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||| | |||| |||| |||||||||| |||||||||||  |||||||||||    
T  26159661 ggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaattttatctataagttga 26159756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 15672348 - 15672266
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||||||| ||||||||||||  |||||||||||||  ||||||| |||||||||| || || |||| | |||||||||    
T  15672348 ggattaagccaccacatatgataatcgaaagcaaaattagtgtgatttactttcaaccaccagtagcattgcaacttaatttt 15672266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 369
Target Start/End: Complemental strand, 9145711 - 9145608
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaa 365  Q
    |||||||||||| |  | || |||||||||||||||||||| ||||||   ||||||||| | || |||||||||||||||||  ||| ||| |||| ||    
T  9145711 ggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaattttatctagaagctgattaa 9145612  T
Q  366 taga 369  Q
    ||||    
T  9145611 taga 9145608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 36781115 - 36781073
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattag 305  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  36781115 aggggattaagccactacatgtgataattaaaagtaaaattag 36781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 9493803 - 9493742
Alignment:
Q  287 taattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||| ||||| |||||    
T  9493803 taatgaaaagcaaaattaggataatttgttttcaaccatcagaaggattgtagctttatttt 9493742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 34514355 - 34514396
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaatt 303  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  34514355 aaggggattaagccaccacatatgatagttaaaagcaaaatt 34514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 26698184 - 26698102
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||   ||||||||| |||||||||| |||||||||||    
T  26698184 ggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatttt 26698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 31160905 - 31161047
Alignment:
Q  260 agaaggggattaagccactacatatgataattaaaagcaaaattaggatgattt--attttcaaccacaagaaggattggagcttaattttccctataag 357  Q
    |||| ||||||||| ||| ||||  | |||||||||||||||||||||||||||  |  ||||||||| | |||| |||||||||||||||  |||||||    
T  31160905 agaaagggattaagtcacaacatggggtaattaaaagcaaaattaggatgatttacaccttcaaccaccataagggttggagcttaattttatctataag 31161004  T
Q  358 ttgatgaatagagtctcccttttgttataaaaactctagcattc 401  Q
    |||||  ||||| |  ||||||||||  ||||||||||||||||    
T  31161005 ttgattgatagaattccccttttgtt-gaaaaactctagcattc 31161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 55416981 - 55416901
Alignment:
Q  287 taattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaata 367  Q
    |||||||||||||||||||||||||||   ||||||||| ||||| |||| |||||||||||  ||||||| |||||||||    
T  55416981 taattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattttatctataagctgatgaata 55416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 4492872 - 4492962
Alignment:
Q  270 taagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttg 360  Q
    |||||| | |||| ||||||||||||  |||||||||||||||||| |||||| || |||| ||||||| |||||||||  ||||||||||    
T  4492872 taagccgccacatgtgataattaaaaataaaattaggatgatttatcttcaactaccagaaagattggatcttaattttatctataagttg 4492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 48825348 - 48825434
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||||||||||| |||| || ||||||||| |||||||||||||||||   ||||||||| | || ||||| | |||||||||    
T  48825348 aaggggattaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttcaaccaccaaaaagattgtaccttaatttt 48825434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 53146990 - 53147037
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgattt 313  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  53146990 ggattaagccaccacatatggtaattaaaagcaaaattatgatgattt 53147037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 39809851 - 39809895
Alignment:
Q  268 attaagccactacatatgataattaaaagcaaaattaggatgatt 312  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||    
T  39809851 attaagccacgacatgtgataattaaaagaaaaattaggatgatt 39809895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 372
Target Start/End: Complemental strand, 21162613 - 21162574
Alignment:
Q  333 attggagcttaattttccctataagttgatgaatagagtc 372  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  21162613 attggagcttaattttctctataagttggtgaatagagtc 21162574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 23636671 - 23636628
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattag 305  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||    
T  23636671 aaggagattaagccaccacatatgatagttaaaagcaaaattag 23636628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 348
Target Start/End: Complemental strand, 33677775 - 33677689
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||| ||||||||||  |||| ||||||||||||||||||||| |||||||| | ||||||||  ||||||||||||||||||||||    
T  33677775 aaggagattaagccaacacatgtgataattaaaagcaaaattaagatgatttgtcttcaaccattagaaggattggagcttaatttt 33677689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 44962233 - 44962135
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttg 360  Q
    ||||| ||||||||||  ||| ||||||||||||||||||||| |||||||||| ||| || |  | ||| ||||||||||||||||  ||||||||||    
T  44962233 aagggaattaagccaccgcatgtgataattaaaagcaaaattatgatgatttatcttcgactatcaaaagaattggagcttaattttatctataagttg 44962135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 52243498 - 52243437
Alignment:
Q  287 taattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||| | ||||||||||||||||   |||| |||| ||||||||||||||||||||||    
T  52243498 taattaaatgtaaaattaggatgatttgccttcagccaccagaaggattggagcttaatttt 52243437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 46232348 - 46232418
Alignment:
Q  279 acatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttc 349  Q
    |||||||||| || ||||||||||||| ||||||  | ||||||||| | || ||||| ||||||||||||    
T  46232348 acatatgatagttgaaagcaaaattagaatgattcgtcttcaaccaccataaagattgaagcttaattttc 46232418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 24599021 - 24599106
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattt 347  Q
    |||||||| ||||||| ||||||||  |||||||||||||||| | ||||||   || ||||||  ||||||||| || |||||||    
T  24599021 aaggggatgaagccaccacatatgacgattaaaagcaaaattaaggtgatttgcgttgaaccaccggaaggattgaagtttaattt 24599106  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 41038644 - 41038681
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaatt 303  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  41038644 ggattaagccaccacatatgataactaaaagcaaaatt 41038681  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 6561132 - 6561227
Alignment:
Q  266 ggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttga 361  Q
    |||||||||||| |||||||||||||||||| |||||||  |||||||   ||||||||| |||||||||||||||||| |||  | |||||||||    
T  6561132 ggattaagccaccacatatgataattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaactttttcaataagttga 6561227  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 34257687 - 34257584
Alignment:
Q  271 aagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaatagag 370  Q
    ||||||| |||| ||||||||||||| ||| ||||||||||||   ||| ||||| |||| || || |||||||||||  |||||||||||| ||||||     
T  34257687 aagccaccacatgtgataattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtctataagttgattaatagaa 34257588  T
Q  371 tctc 374  Q
    ||||    
T  34257587 tctc 34257584  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 23027962 - 23028028
Alignment:
Q  270 taagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattg 336  Q
    |||||||| ||||||||||||||||| ||||||| |||| |||||| ||||| ||| ||||||||||    
T  23027962 taagccaccacatatgataattaaaaacaaaatttggatcatttatcttcaatcaccagaaggattg 23028028  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 21636227 - 21636309
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaa 344  Q
    |||| |||||||| || ||||||| || ||||||||||||||| | ||||||  ||| |||||| | |||||||| |||||||    
T  21636227 aaggagattaagctaccacatatggtagttaaaagcaaaattaaggtgatttgcttttaaccaccacaaggattgaagcttaa 21636309  T

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Target: scaffold0519 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 9048 - 9185
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgat 362  Q
    |||||||||||||||| ||| |||||| |||||| ||| |||||||||||| | ||||||||| | || || | ||||||||||||  ||||||  ||||    
T  9048 aggggattaagccactgcatctgataagtaaaagtaaagttaggatgatttgtcttcaaccaccaaaaagacttgagcttaattttatctataaactgat 9147  T
Q  363 gaatagagtctcccttttgttataaaaactctagcattc 401  Q
     |||||| ||||| || ||||  ||| ||||||||||||    
T  9148 taatagaatctcctttatgtt-gaaagactctagcattc 9185  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 3452255 - 3452336
Alignment:
Q  284 tgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaa 365  Q
    |||||||||||| ||||||||||||| |||   ||||||||| |||||||||| |||||||||||   ||||||||||||||    
T  3452255 tgataattaaaaacaaaattaggatggtttgccttcaaccactagaaggattgtagcttaattttatttataagttgatgaa 3452336  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 21393945 - 21394010
Alignment:
Q  317 ttcaaccacaagaaggattggagcttaattttccctataagttgatgaatagagtctcccttttgt 382  Q
    ||||||||| |||||||||| ||||||||||   |||||||||||| |||||| ||||||||||||    
T  21393945 ttcaaccaccagaaggattgaagcttaatttcatctataagttgattaatagattctcccttttgt 21394010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 39978391 - 39978327
Alignment:
Q  284 tgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||||||||||||| || ||||| || | ||||||||  | |||||||||| |||||||||    
T  39978391 tgataattaaaagcaaaaatatgatgagttgtcttcaaccatcaaaaggattggaacttaatttt 39978327  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 15259061 - 15259175
Alignment:
Q  269 ttaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaatag 368  Q
    ||||||||| |||||||||| || ||||||||||||  |||||||  |||||||||  | || ||||| |||||||||||| | | ||| || |||||||    
T  15259061 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatag 15259160  T
Q  369 agtctcccttttgtt 383  Q
    | || ||||||||||    
T  15259161 aatcccccttttgtt 15259175  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 35562616 - 35562701
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaatttt 348  Q
    |||||||||||  |||||||  || |||||||||||||||||||||||||||  ||||| || |  ||||||||| |||||||||||    
T  35562616 aaggggattaaatcactacacgtggtaattaaaagcaaaattaggatgattttctttcagcc-ccggaaggattgtagcttaatttt 35562701  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 36274857 - 36274966
Alignment:
Q  261 gaaggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttg 360  Q
    |||||||||||||| |  ||||||| ||||||||||||||| ||||||||| |   ||||  ||| |||||||||| | ||||| |||| |||||| ||     
T  36274857 gaaggggattaagcgaacacatatggtaattaaaagcaaaactaggatgatctgccttcagtcaccagaaggattgtaacttaaatttctctataatttt 36274956  T
Q  361 atgaatagag 370  Q
     |||||||||    
T  36274957 gtgaatagag 36274966  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 513425 - 513524
Alignment:
Q  284 tgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgatgaatagagtctcccttttgtt 383  Q
    ||||| |||||||||||||| | ||| ||| | |||||||||  ||||||| | |||||||||||  |||||  |||||||||||| | ||| |||||||    
T  513425 tgatatttaaaagcaaaatttgaatggtttgtcttcaaccaccggaaggatcgtagcttaattttatctatatattgatgaatagaatttcctttttgtt 513524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 27626151 - 27626202
Alignment:
Q  262 aaggggattaagccactacatatgataattaaaagcaaaattaggatgattt 313  Q
    |||| |||||||| || ||||||| ||||||||||||||||||| |||||||    
T  27626151 aaggagattaagctaccacatatgctaattaaaagcaaaattagaatgattt 27626202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 25714547 - 25714682
Alignment:
Q  263 aggggattaagccactacatatgataattaaaagcaaaattaggatgatttattttcaaccacaagaaggattggagcttaattttccctataagttgat 362  Q
    ||||||||||||||| |||| | |||||| |||| ||||||||| |||||| | |||| |||  |  | ||||| |||||||||||  ||||||| | ||    
T  25714547 aggggattaagccaccacatgtaataattgaaagtaaaattagggtgatttgtcttcagccaacaatatgattgaagcttaattttgtctataaggttat 25714646  T
Q  363 gaatagagtctcccttttgttataaaaactctagcattc 401  Q
    |||| || || ||   |||||||  ||||||||||||||    
T  25714647 gaattgattcccc---ttgttattgaaactctagcattc 25714682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 21802 - 21877
Alignment:
Q  90 ttaatcaaacatcttagtctttggagcacaagaagttccagaagagaactaaggaagaaaaatatttgttacatca 165  Q
    ||||||||||||||||||||||  |||||||| ||| ||| || | |  ||||||| |||||||||||||||||||    
T  21802 ttaatcaaacatcttagtcttttcagcacaagtagtaccaaaaaaaagttaaggaataaaaatatttgttacatca 21877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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