View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_48 (Length: 410)
Name: NF16561_low_48
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 31465053 - 31464687
Alignment:
| Q |
1 |
gaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaggatataggaatgcgtggagagagagcatcttaaagatcaggaatgtgccaagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31465053 |
gaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaagatataggaatgcgtggagagagagcatcttaaagatcaggaatgtgccaagata |
31464954 |
T |
|
| Q |
101 |
gagaatacatt--atgttaaccatattacaaatatttcactgtctgttttagccgatgcatgtttatagaatcctaggagcatgtttggattagctttgt |
198 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464953 |
gagaatacatttcatgttaaccatattacaaatatttcactgtctgttttagccgatgcatgtttatagaatcctaggagcatgtttggattagctttgt |
31464854 |
T |
|
| Q |
199 |
cttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgatttta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
31464853 |
cttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcatcaaactcatagtgatttta |
31464754 |
T |
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| Q |
299 |
aatctgcatttggactatataaactcattctcatcctcctttcctctgagaactggagggtttacac |
365 |
Q |
| |
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| T |
31464753 |
aatctgcatctggactatataaactcattctcatcctcctttcctctgagaactggagggttaacac |
31464687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 14570564 - 14570513
Alignment:
| Q |
233 |
ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaac |
284 |
Q |
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| T |
14570564 |
ctacaatttagaactttaacaaaatcaacgtgtcaccgtgatttcatcaaac |
14570513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 62 - 331
Target Start/End: Original strand, 39279540 - 39279823
Alignment:
| Q |
62 |
gagagagagcatcttaaagatcaggaatgtgccaagatagagaatacatt--atgttaaccatat-----tacaaatatttcactgtctgttttagccga |
154 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||| |||| ||||||||||||| |||||| |||||| | |
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| T |
39279540 |
gagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaactatataatattacaaatatttcatggtctgtcttagccaa |
39279639 |
T |
|
| Q |
155 |
tgcatgtttatagaatcctaggagcatgtttggattagctttgtcttcttcagaatcacaatgttcca-----attt--gcaaacctacactttagaact |
247 |
Q |
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| T |
39279640 |
tgccttcttataaacttctaggagcatttttttattagcttcatgtttttcggaatcccagtctgccattatgattttggcaaaactacactttagaact |
39279739 |
T |
|
| Q |
248 |
tcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattttaaatctgcatttggactatataaactcattctca |
331 |
Q |
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|||||||||||||| ||||||||||||||| ||||| |||| |||||| |||| |||| | |||||||||||| ||||||||| |
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| T |
39279740 |
tcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcactaggactatataaattcattctca |
39279823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 8091311 - 8091258
Alignment:
| Q |
243 |
gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattt |
296 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| |
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| T |
8091311 |
gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaattcaatgtgattt |
8091258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 8091180 - 8091140
Alignment:
| Q |
243 |
gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaa |
283 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |
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| T |
8091180 |
gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaa |
8091140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 25116571 - 25116531
Alignment:
| Q |
247 |
ttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
287 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
25116571 |
ttcaacaaaatcacgttgtcagtgtgatttcatcaaactca |
25116531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 34583745 - 34583692
Alignment:
| Q |
234 |
tacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
287 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||| |
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| T |
34583745 |
tacactttagaacttcaacgaaatcacgatgtcaccgtaattacatcaaactca |
34583692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 10478316 - 10478366
Alignment:
| Q |
237 |
actttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
287 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||| |||||||||| |
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|
| T |
10478316 |
actttggaacttcaacaaaatcacggtggcaccgtgattttatcaaactca |
10478366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 18898657 - 18898608
Alignment:
| Q |
239 |
tttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac |
288 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
18898657 |
tttagagcttcaacaaaatcaaggtgtcaccgtgatttcatcaagctcac |
18898608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 6019622 - 6019567
Alignment:
| Q |
233 |
ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac |
288 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||| |||||| || ||||||| |
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| T |
6019622 |
ctacactttataacttcaacaaaatcacgttgtcaccacgatttcgtccaactcac |
6019567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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