View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_49 (Length: 406)
Name: NF16561_low_49
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 182 - 390
Target Start/End: Complemental strand, 28535911 - 28535700
Alignment:
| Q |
182 |
gagtaccttcctacctttatgtttggctcttcaactgctgctagttgattaccttgaattccctgccattaatttcaagttaacatttatttaataaaac |
281 |
Q |
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| T |
28535911 |
gagtaccttcctacctttatgtttggttcttcaactgctgctagttgattaccttgaattccctgccattaatttcaagttaacatttatttaataaaac |
28535812 |
T |
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| Q |
282 |
taatcatatagtatat----acatgtctatctatatttgtatgtgattctttgatgtgtatgcacttctgaaatatatattttttaaacatgcagtgaat |
377 |
Q |
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| T |
28535811 |
taatcatatagtatatacatacatgtctatctatatttgtatgtgattctttgatgtctat-ctatatttaaatatatattttttaaacatgcagtgaat |
28535713 |
T |
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| Q |
378 |
tttattttcaaag |
390 |
Q |
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| T |
28535712 |
tttattttcaaag |
28535700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 28536078 - 28535980
Alignment:
| Q |
11 |
atgaaggagaatgatattgtgaatttcaaattcttgtttattaattcaaaattaattnnnnnnnnnnnnctagcatgtgagaaaatatataagaccttga |
110 |
Q |
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| T |
28536078 |
atgaaggagaatgatattgtgaatttcaaattcttgtttattaattcaaaattaatt----aaaaaaaactagcatgtgagaaaatatataagaccttga |
28535983 |
T |
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