View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_5 (Length: 764)
Name: NF16561_low_5
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 551 - 746
Target Start/End: Complemental strand, 52548563 - 52548368
Alignment:
| Q |
551 |
aaatcttgaggtaaatatcatatcaactaattttatgagaatacccaacacaataggattttgtattgtaaatttacttgtttacttttgttaatgttat |
650 |
Q |
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| T |
52548563 |
aaatctagaggtaaatatcatatcaactaattttatgagaatacccaacacaataggattttgtattgtaaatttacttgtttacttttgttaatgttat |
52548464 |
T |
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| Q |
651 |
cttaggtgcatgaatttaagacaaataatggtgcttgtgctgccttccttgcaaattatgacaccagaaatgcggcaacggttaaatatggagatg |
746 |
Q |
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| T |
52548463 |
cttaggtgcatgaatttaagacaaataatggtgtttgtgctgccttccttgcaaattatgacaccagaaatgcggcaacggttaaatatggagatg |
52548368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 52548786 - 52548586
Alignment:
| Q |
13 |
gagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaaattgatttctcattcctgaattagaagagtataagatacttatatac |
112 |
Q |
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| T |
52548786 |
gagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaaattgatttctcattactgaattagaagagtataagatacttatatac |
52548687 |
T |
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| Q |
113 |
gcatattgagctctatgttagcttattgtatg--------------ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaa |
198 |
Q |
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| T |
52548686 |
gcatattgagctctatgttagcttattgtatgtaacctacattagattgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaa |
52548587 |
T |
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| Q |
199 |
c |
199 |
Q |
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| T |
52548586 |
c |
52548586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 26619274 - 26619328
Alignment:
| Q |
145 |
ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac |
199 |
Q |
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| T |
26619274 |
ttgctaacacataacaaactcaaagctatgcaatgattaagtaatcatttctaac |
26619328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 565
Target Start/End: Original strand, 17126794 - 17126923
Alignment:
| Q |
436 |
tatcaggacttttaaaccagccaaaatgggggcatttgaatgaattacataaggcaattaagctatgtgaaccagctttattgtctgttgatcccatagt |
535 |
Q |
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| T |
17126794 |
tatcaggacttataagtgaaccaaaatgggggcatctaagagatttacataaagcaataaagcaatgcgagtcagctttagtgtctgttgatccgacagt |
17126893 |
T |
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| Q |
536 |
aacatggcctggaaaaaatcttgaggtaaa |
565 |
Q |
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| T |
17126894 |
gtcatggcctggaaaaaaccttgaggtaaa |
17126923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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