View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_51 (Length: 404)
Name: NF16561_low_51
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 44 - 391
Target Start/End: Complemental strand, 10513555 - 10513208
Alignment:
| Q |
44 |
ctattccaaaatttgttcaaaaagatcagcttctctggagacatgcctcttctggtaatttgttgttgaaagatgcatatgatttcaaaaatcataagta |
143 |
Q |
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| T |
10513555 |
ctattccaaaatttgttcaaaaagatcagcttctctggagacatacatcttctggtaatttgttgttgaaagatgcatatgatttcaaaaatcattagta |
10513456 |
T |
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| Q |
144 |
tcaaaatgtgcattgggctgaatgcattttgaacaaagatattcctccagctagatccctttttgtgtggagattcatgcacaataaggttcctacagat |
243 |
Q |
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| T |
10513455 |
tcaaaacgtgcattgggctgaatgcatttggaacaaagatattcctccagctatatccctttttgtgtggagattcatgcacaataaggttcctacagat |
10513356 |
T |
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| Q |
244 |
gaaaatttaatgattacagaatgcaatcttccttcaatgtgtagcatctgcctcaaatgttttgaaaactcttttcatcttttctttgaatgtcatcttg |
343 |
Q |
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| T |
10513355 |
gaaaatttaatgattaggggatgcaatcttccttcaatttgtagcatctgcctcaaatgttctgaaaactcttttcatcttttctttgaatgtcattttg |
10513256 |
T |
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| Q |
344 |
caactaagctttgggcatgtttagctaatgttatcaggttgcctcttc |
391 |
Q |
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| T |
10513255 |
caactaagctttggtcatggttagctaatgttatcaggttgcctcttc |
10513208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 15800492 - 15800422
Alignment:
| Q |
178 |
aaagatattcctccagctagatccctttttgtgtggagattcatgcacaataaggttcctacagatgaaaa |
248 |
Q |
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| T |
15800492 |
aaagaaattcctccagcaagatcactttttgtctggagattcatgcataacaaagtccctacagatgaaaa |
15800422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 29431737 - 29431807
Alignment:
| Q |
178 |
aaagatattcctccagctagatccctttttgtgtggagattcatgcacaataaggttcctacagatgaaaa |
248 |
Q |
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| T |
29431737 |
aaagaaattcctccagcaagatcactttttgtctggagattcatgcataacaaagtccctacagataaaaa |
29431807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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