View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_53 (Length: 402)

Name: NF16561_low_53
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_53
NF16561_low_53
[»] chr5 (6 HSPs)
chr5 (1-389)||(12531593-12531978)
chr5 (1-67)||(12546960-12547026)
chr5 (13-62)||(9894755-9894804)
chr5 (1-67)||(12538699-12538765)
chr5 (33-66)||(12537076-12537109)
chr5 (1-61)||(9866624-9866684)
[»] chr4 (1 HSPs)
chr4 (7-56)||(24860653-24860702)
[»] chr8 (2 HSPs)
chr8 (1-57)||(38807097-38807153)
chr8 (7-57)||(43479645-43479695)
[»] chr2 (1 HSPs)
chr2 (1-61)||(13576449-13576509)
[»] chr7 (2 HSPs)
chr7 (1-58)||(3929931-3929988)
chr7 (12-56)||(21320195-21320239)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 12531593 - 12531978
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttattgcaatattcaaaactagttctattggtgttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531593 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttattgcaatattcaaaactagttctattggtgttgg 12531692  T
Q  101 ttcttttgcttagatagggattaggtttatgatgttaannnnnnnnnnnnagtttgctctggaattaatcttcaatgtaacaatggttggatctacaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12531693 ttcttttgcttagatagggattaggtttatgatgttaatttttcttttttagtttgctctggaattaatcttcaatgtaacaatgcttggatctacaatt 12531792  T
Q  201 tcgtagtactattatagttatgcattgccttgatttggcatataagatgaatggataacacttttcaagattcagtatttctaaataacagtcagttata 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531793 tcgtagtactattgtagttatgcattgccttgatttggcatataagatgaatggataacacttttcaagattcagtatttctaaataacagtcagttata 12531892  T
Q  301 gattaaatgaacatgattatgaaataaatctnnnnnnnngtgattatgaaaagtagtttacaaattttg-tgaagtttttcatattccct 389  Q
    |||||||||||||||||||||||||||||||          ||||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  12531893 gattaaatgaacatgattatgaaataaatctaaaaac----gattaagaaaagtggtttacaaattttgttaaagtttttcatattccct 12531978  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12547026 - 12546960
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttat 67  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  12547026 actatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttagatttggttat 12546960  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9894755 - 9894804
Alignment:
Q  13 aaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 62  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9894755 aaggatattgaacttgctcgcagaatcagaggcgagagggcttagatttg 9894804  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12538699 - 12538765
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttat 67  Q
    |||||||||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| ||||    
T  12538699 actatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttgattat 12538765  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 12537076 - 12537109
Alignment:
Q  33 cagaatcagaggcgagagggcttagatttggtta 66  Q
    ||||||||||||||||||||||||||||||||||    
T  12537076 cagaatcagaggcgagagggcttagatttggtta 12537109  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9866684 - 9866624
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 61  Q
    ||||| |||||| |||| || |||||||||   |||||||||||| |||||||||||||||    
T  9866684 actattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttagattt 9866624  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 24860653 - 24860702
Alignment:
Q  7 atgcctaaggatattcaactcgctcgcagaatcagaggcgagagggctta 56  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24860653 atgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38807097 - 38807153
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 57  Q
    ||||||||||||||||| |||||||| ||  | ||||||||||||||||||||||||    
T  38807097 actatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttag 38807153  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 43479695 - 43479645
Alignment:
Q  7 atgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 57  Q
    |||||||||||||||||||| ||  | ||||| ||||||||||||||||||    
T  43479695 atgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13576449 - 13576509
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 61  Q
    ||||| |||||||||||||||||||| ||  | |||||||||||||| |||||||||||||    
T  13576449 actattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttagattt 13576509  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3929988 - 3929931
Alignment:
Q  1 actatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 58  Q
    ||||| ||||| |||||||||||||| ||  | |||||||||||||| ||||||||||    
T  3929988 actattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 3929931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
Q  12 taaggatattcaactcgctcgcagaatcagaggcgagagggctta 56  Q
    ||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  21320195 taaggatattcaacttgcttgcataatcagaggtgagagggctta 21320239  T

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