View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_54 (Length: 401)
Name: NF16561_low_54
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 6064057 - 6063687
Alignment:
| Q |
13 |
aaaatgtgtatatgtgggttaaatagaagccaaatcactgacccatcagcaatcacttgttttatttagtagggttaggtacttgataatcaaagtatat |
112 |
Q |
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| T |
6064057 |
aaaatgtgtatatgtgggttaaatagaagccaaatcactaacccatcagcaatcacttgttttatttagtagggttaggtacttgataatcaaagtatat |
6063958 |
T |
|
| Q |
113 |
tattaagccatggtaatgacgacttcaacagtataatcacaatgaagggaacacaactagaagtttcaagaccacatgccaattgtatgccagcttaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6063957 |
tattaagccatggtaatgacgacttcaacagtataatcacaatgaagggaacacaactagaagtttcaagaccacatgccaattgtatgccagcttaaat |
6063858 |
T |
|
| Q |
213 |
gttgaattaatgcattatgctcattgcgttagttccacatgcttattctatagtaaactttaaagttaccattgattttaaataatttacatatttgctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6063857 |
gttgaattaatgcattatgctcattgcgttagttccacatgcctattctatagtaaactttaaagttaccattgattttaaataatttacatatttactg |
6063758 |
T |
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| Q |
313 |
gcatattctcatggttattctacatcaaattgcccttaattaacttgaacatggtttcatgatggtgaaca |
383 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6063757 |
gcatattctcatgattattctacatcaaattgcccttaattaacttgaacatggtttcatgatggtgaaca |
6063687 |
T |
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