View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_55 (Length: 400)
Name: NF16561_low_55
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 6769660 - 6769283
Alignment:
| Q |
1 |
agaatcagttagttgtagcagctagatattaaatgccaaatgttaaaaatgatagtgtagagatataaatgaaccatggtaaggactttcaatataacaa |
100 |
Q |
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| T |
6769660 |
agaatcagttagttgtagcagctagatattaaatgccaaatgttaaaaatgatagtgtagagatataaatgaaccatggtaaggactttcaatataacaa |
6769561 |
T |
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| Q |
101 |
tctttttgtttagcaccgactttatggaatcgcaatgaattttgacataagcttagttttgtagcttcatcattttgactggggtgtatgtgggtcggtt |
200 |
Q |
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| T |
6769560 |
tctttttgtttggcaccgactttatggaatcacaatgaattttgacataagcttagttttgtagcttcatcatttttactggggtgtatgtgggtcggtt |
6769461 |
T |
|
| Q |
201 |
tgggttggattttgccaaactcaagacctgaatcgtgtatgttactctgatttgagtgaggtaaaacaaccatcagttatattattgagccgtttcagat |
300 |
Q |
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| T |
6769460 |
tgggttggattttgccaaactcaagacctgaattgtgtatgttactttggtttgagtgaggtaaaataaccatcagttatattattgaatcggtttagat |
6769361 |
T |
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| Q |
301 |
aaatccattaatttccgctttaggttacgcaaannnnnnngatgggtttaactaaacccattaatttctgattttgcaga |
380 |
Q |
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| T |
6769360 |
aaatccattaatttccgctttaggttacgcaaa--tttttgatggatttaagtaaacccattaatttctgattttgcaga |
6769283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 29030389 - 29030474
Alignment:
| Q |
181 |
ggggtgtatgtgggtcggtttgggttggattttgccaaactcaagacctgaatcgtgtatgttactctgatttgagtgaggtaaaa |
266 |
Q |
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| T |
29030389 |
ggggtgtacgtgggtcgatttggattgagtttggccaaacccaagacctgaaccatataaggtactttgatttgggtgaggtaaaa |
29030474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 14633750 - 14633827
Alignment:
| Q |
189 |
tgtgggtcggtttgggttggattttgccaaactcaagacctgaatcgtgtatgttactctgatttgagtgaggtaaaa |
266 |
Q |
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| T |
14633750 |
tgtgggtggatttgggttggatttgaccaaacctaagatctgaatcatgtatggtactccggtttgggtgaggtaaaa |
14633827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 21311840 - 21311880
Alignment:
| Q |
249 |
gatttgagtgaggtaaaacaaccatcagttatattattgag |
289 |
Q |
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| T |
21311840 |
gatttgggtgaggtaaaataaccatctgttatattattgag |
21311880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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