View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_56 (Length: 399)
Name: NF16561_low_56
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 62 - 249
Target Start/End: Original strand, 47389538 - 47389725
Alignment:
| Q |
62 |
taatcagtagcattagggcattgattagcactttcataaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
161 |
Q |
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| T |
47389538 |
taatcagtagcattagggcattgatcagcactttcttaaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
47389637 |
T |
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| Q |
162 |
attgaagcaagcaaacaatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
249 |
Q |
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| T |
47389638 |
attgaagcaagcaaacaatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
47389725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 40626271 - 40626083
Alignment:
| Q |
62 |
taatcagtagcattagggcattgattagcactttcataaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
161 |
Q |
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| T |
40626271 |
taatcagtaccattagggtattgattaccactttcttaaagtcacttacgcctttattaataagaaaataactgtagaatataagttaggatcatcaaga |
40626172 |
T |
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| Q |
162 |
attgaagcaagcaaac-aatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
249 |
Q |
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| T |
40626171 |
attgaagcaagcaaacgagttttttcacatggctactaaaataaatacccatgaatatgcagcaaccaaatacactaaaaagtgatata |
40626083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 47389798 - 47389930
Alignment:
| Q |
250 |
ctacggtgaacatagtagcaatacatgcagactgttcagttttatttattcataaaaaacaatccttaaattctcttatttccgctattgaggcaacatg |
349 |
Q |
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| T |
47389798 |
ctacggtgaacatagtagcaatacatgcagactgttctgttttatttattcataaaaaacaatccttaaattctcttatttccgctattgaggcaacatg |
47389897 |
T |
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| Q |
350 |
tgctggccggagctggaatagcggccgctattt |
382 |
Q |
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| T |
47389898 |
tgctggccggagctggaatagcggccgctattt |
47389930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 47389409 - 47389458
Alignment:
| Q |
16 |
atcacaggaattaaatacagtcaacaaaaagaaaattcagatgtgataat |
65 |
Q |
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| T |
47389409 |
atcacaggaattaaatacagtcaacaaaaagaaaattcaggtgtgataat |
47389458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 40626401 - 40626352
Alignment:
| Q |
16 |
atcacaggaattaaatacagtcaacaaaaagaaaattcagatgtgataat |
65 |
Q |
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| T |
40626401 |
atcacaggaattaaataccgtcaacaaaaagaaaattcaggtgtgataat |
40626352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 40625929 - 40625862
Alignment:
| Q |
315 |
ttaaattctcttatttccgctattgaggcaacatgtgctggccggagctggaatagcggccgctattt |
382 |
Q |
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| T |
40625929 |
ttaaactctcttatttctgctattgcctctacatgtgctagccggagctggaatagcggccactattt |
40625862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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