View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_57 (Length: 397)

Name: NF16561_low_57
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_57
NF16561_low_57
[»] chr4 (4 HSPs)
chr4 (20-263)||(18767601-18767844)
chr4 (331-379)||(31559593-31559641)
chr4 (331-377)||(49372283-49372329)
chr4 (331-379)||(5249923-5249971)
[»] chr5 (3 HSPs)
chr5 (329-378)||(7287159-7287208)
chr5 (331-379)||(1839314-1839361)
chr5 (329-377)||(9581632-9581679)
[»] chr1 (5 HSPs)
chr1 (329-378)||(41677294-41677343)
chr1 (331-381)||(41507161-41507211)
chr1 (329-378)||(10627780-10627829)
chr1 (331-379)||(46543411-46543458)
chr1 (331-379)||(52437549-52437597)
[»] chr3 (5 HSPs)
chr3 (331-379)||(44813416-44813464)
chr3 (331-379)||(52485527-52485575)
chr3 (331-379)||(32186090-32186138)
chr3 (331-379)||(34662061-34662109)
chr3 (331-379)||(46966069-46966117)
[»] chr6 (2 HSPs)
chr6 (331-378)||(17551348-17551395)
chr6 (329-378)||(32316898-32316947)
[»] chr7 (4 HSPs)
chr7 (333-379)||(41430120-41430166)
chr7 (331-379)||(33180679-33180726)
chr7 (331-379)||(40231675-40231722)
chr7 (331-379)||(46532557-46532604)
[»] chr8 (2 HSPs)
chr8 (329-378)||(23754676-23754725)
chr8 (331-379)||(41701217-41701264)
[»] chr2 (2 HSPs)
chr2 (329-378)||(1352441-1352490)
chr2 (345-381)||(30546337-30546373)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 18767601 - 18767844
Alignment:
Q  20 agtacctcctctaaaagctagcaagcacaaaaaagcagggacttaacgatgatgtgattcaaaagaccctacatgtgcccagtacagaagccattatggt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18767601 agtacctcctctaaaagctagcaagcacaaaaaagcagggacttaacgatgatgtgattcaaaagaccctacatgtgcccagtacagaagccattatggt 18767700  T
Q  120 tgacgccatcgaagtagacacaaagaggtggatgacctcgataattcaatatttggaagaagagttcacaccatcgaatgctgaacttttttcctctttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18767701 tgacgccatcgaagtagacacaaagaggtggatgacctcgataattcaatatttggaagaagagttcacaccatcgaatgctgaacttttttcctctttt 18767800  T
Q  220 cctctttgtcagaaggtgtatacactcataagctatgcaagaaa 263  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  18767801 cctctttgtcacaaggtgtatacactcataagctatacaagaaa 18767844  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 31559593 - 31559641
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| |||||||||||| | ||| ||||||||||||||||||    
T  31559593 tcatactcacattatatttttactttctctctctattgttttggttttc 31559641  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 49372329 - 49372283
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttt 377  Q
    ||||||||||| |||||||||||| ||||| ||||||| ||||||||    
T  49372329 tcatactcacattatatttttactttatctctctattgatttggttt 49372283  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 5249923 - 5249971
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| ||| |||||||| | ||| ||||||||||||||||||    
T  5249923 tcatactcacattatgtttttactttctctctctattgttttggttttc 5249971  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 7287208 - 7287159
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||||| |||||||||||| | ||| |||||||||||||||||    
T  7287208 tttcatactcacattatatttttactttctctctctattgttttggtttt 7287159  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 1839361 - 1839314
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  1839361 tcatactcacattat-tttttactttatctttctattgttttggttttc 1839314  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 9581632 - 9581679
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggttt 377  Q
    ||||||||||||| ||| |||||||| ||||| ||||||||||||||||    
T  9581632 tttcatactcacattat-tttttactttatctctctattgttttggttt 9581679  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 41677343 - 41677294
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||||| |||||||||| | ||||| |||||||||||||||||    
T  41677343 tttcatactcacattatatttttattttatctctctattgttttggtttt 41677294  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 41507211 - 41507161
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttcat 381  Q
    ||||||||||| ||| || ||||| |||||||||||| |||||||||||||    
T  41507211 tcatactcacattatgttcttactttatctatctattattttggttttcat 41507161  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 10627829 - 10627780
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||||| |||||||| ||| ||||| |||||||||||| ||||    
T  10627829 tttcatactcacattatattttcactttatctctctattgttttgatttt 10627780  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 46543458 - 46543411
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  46543458 tcatactcacactat-tttttactttatctctctattgctttggttttc 46543411  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 52437549 - 52437597
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| |||||||||||| ||||| ||||||| |||| |||||    
T  52437549 tcatactcacattatatttttactttatctttctattgctttgattttc 52437597  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 44813464 - 44813416
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  44813464 tcatactcacattatatttttactttatctctctattgctttggttttc 44813416  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 52485527 - 52485575
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  52485527 tcatactcacattatatttttactttatctctctattgctttggttttc 52485575  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 32186090 - 32186138
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    |||||||| || |||||||||||| ||| | ||||||||||||||||||    
T  32186090 tcatactctcattatatttttactttatttctctattgttttggttttc 32186138  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 34662061 - 34662109
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| |||||||||||| ||||||| |||| ||||| |||||    
T  34662061 tcatactcacattatatttttactttatctatttattattttgattttc 34662109  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 46966117 - 46966069
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||  ||| |||||||| | ||||||||||||||||||||||    
T  46966117 tcatactcacgttatgtttttactttctctatctattgttttggttttc 46966069  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 17551395 - 17551348
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  17551395 tcatactcacattatgtttttactttatctctctattgttttggtttt 17551348  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 32316947 - 32316898
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||||| ||| |||||||| ||||| ||||||| |||||||||    
T  32316947 tttcatactcacattatctttttactttatctctctattgctttggtttt 32316898  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 41430166 - 41430120
Alignment:
Q  333 atactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  41430166 atactcacattatatttttactttatctctctattgctttggttttc 41430120  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 33180726 - 33180679
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  33180726 tcatactcacattat-tttttactttatctctctattgttttggttttc 33180679  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 40231722 - 40231675
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  40231722 tcatactcacattat-tttttactttatctctctattgttttggttttc 40231675  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 46532557 - 46532604
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  46532557 tcatactcacattat-tttttactttatctctctattgttttggttttc 46532604  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 23754725 - 23754676
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||| | |||||||||||| |||||  ||||||||||||||||    
T  23754725 tttcatactcatattatatttttactttatctcactattgttttggtttt 23754676  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 41701217 - 41701264
Alignment:
Q  331 tcatactcacactatatttttactctatctatctattgttttggttttc 379  Q
    ||||||||||| || ||||||||| ||||||||||||||||| ||||||    
T  41701217 tcatactcacatta-atttttactttatctatctattgttttagttttc 41701264  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 1352441 - 1352490
Alignment:
Q  329 tttcatactcacactatatttttactctatctatctattgttttggtttt 378  Q
    ||||||||||||| |||||||||||| ||| | ||||||| |||||||||    
T  1352441 tttcatactcacattatatttttactttatttctctattgctttggtttt 1352490  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 30546373 - 30546337
Alignment:
Q  345 tatttttactctatctatctattgttttggttttcat 381  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  30546373 tatttttactttatctctctattgttttggttttcat 30546337  T

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