View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_59 (Length: 393)

Name: NF16561_low_59
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_59
NF16561_low_59
[»] chr6 (12 HSPs)
chr6 (17-376)||(11002556-11002915)
chr6 (67-372)||(10968380-10968685)
chr6 (69-374)||(10982328-10982633)
chr6 (72-376)||(11018937-11019241)
chr6 (17-374)||(11079699-11080056)
chr6 (73-200)||(11050229-11050356)
chr6 (177-215)||(4256408-4256446)
chr6 (177-211)||(4490156-4490190)
chr6 (177-211)||(4493252-4493286)
chr6 (177-211)||(4557422-4557456)
chr6 (177-211)||(4592528-4592562)
chr6 (178-215)||(4516619-4516656)
[»] chr7 (1 HSPs)
chr7 (177-211)||(3086717-3086751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (177-213)||(3483-3519)
[»] chr2 (1 HSPs)
chr2 (168-212)||(24462263-24462307)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 11002915 - 11002556
Alignment:
Q  17 ctctctcccccaactcatttccactcacaaacccnnnnnnngacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacct 116  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002915 ctctctcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacct 11002816  T
Q  117 ttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11002815 ttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaactgat 11002716  T
Q  217 tcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002715 tcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaac 11002616  T
Q  317 taagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002615 taagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttct 11002556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 372
Target Start/End: Complemental strand, 10968685 - 10968380
Alignment:
Q  67 agttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatag 166  Q
    ||||||||||| |||||||| || |||||||||||||  ||||||| ||||||||||||||| || ||||| || | |||||||||||||||||||||||    
T  10968685 agttccaaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatag 10968586  T
Q  167 cttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattcc 266  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||  || || ||  | ||||||||| |||||||||||||||||||  | ||||||||    
T  10968585 cttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcc 10968486  T
Q  267 cttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgc 366  Q
    ||||| ||| |||||||||||||||||||| || | ||| || ||||||||  | ||||| ||||   |||| ||||| |||| ||| ||||||||||||    
T  10968485 cttttgctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgc 10968386  T
Q  367 tcactt 372  Q
    ||||||    
T  10968385 tcactt 10968380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 69 - 374
Target Start/End: Complemental strand, 10982633 - 10982328
Alignment:
Q  69 ttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagct 168  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| | ||||    
T  10982633 ttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagct 10982534  T
Q  169 tccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccct 268  Q
    ||||| || ||||||||||||||||| |||||||||||||| |  || || ||  | ||||||||| ||||||||||||||||||| || |||||||||     
T  10982533 tccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccc 10982434  T
Q  269 tttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctc 368  Q
    |||| || |||||||||||||||||||| || | ||| || ||||||||  | ||||| || |   |||||||||| | || ||| ||||||||||||||    
T  10982433 tttcttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctc 10982334  T
Q  369 actttt 374  Q
    ||||||    
T  10982333 actttt 10982328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 376
Target Start/End: Complemental strand, 11019241 - 11018937
Alignment:
Q  72 caaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 171  Q
    |||||||||||||||||| || || |||| || | | || | ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||    
T  11019241 caaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttcc 11019142  T
Q  172 aatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccctttt 271  Q
    || || ||||||||||||||||||||||| |||||||| || || |  ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| |    
T  11019141 aacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattcccttgt 11019042  T
Q  272 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 371  Q
    |||| ||||||||||||||||||||||| || || || |||||||| |  |  ||  ||| ||  || ||||| |||| ||| |||||||||||||||||    
T  11019041 cctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcactcctaacaacccacaagaatctttgctcact 11018942  T
Q  372 tttct 376  Q
    |||||    
T  11018941 tttct 11018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 11080056 - 11079699
Alignment:
Q  17 ctctctcccccaactcatttccactcacaaacccnnnnnnngacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacct 116  Q
    |||||||||||||||||||| |||||||||||||       ||| |||| | |||||||||||| |||  ||| |  |||||||||| | | |||| | |    
T  11080056 ctctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagccactttccattcttgcaccaaaatcaatctattcatctt 11079957  T
Q  117 ttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgat 216  Q
     || || || || |  ||||| |  ||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||     
T  11079956 ctgctccgcgtaaagtggccacgttatcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgag 11079857  T
Q  217 tcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaac 316  Q
       || || | ||||| | ||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  11079856 ctatgtcttagtattgaaccttgtggtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaac 11079757  T
Q  317 taagttcctccaagtttgactcgctccttacaatccataagaatctttgctcactttt 374  Q
    | ||||||||| | |     |||||||| |||||||| ||||||||||| ||||||||    
T  11079756 ttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcactttt 11079699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 11050356 - 11050229
Alignment:
Q  73 aaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcca 172  Q
    ||||||||||||||||| || || |||| || | | || | ||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||    
T  11050356 aaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttcca 11050257  T
Q  173 atactgagttccatccacaatgagtcac 200  Q
    | || |||||||||||||||||| ||||    
T  11050256 acacggagttccatccacaatgaatcac 11050229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 4256446 - 4256408
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaactga 215  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  4256446 tgagttccatcctcaatgagtcaagaatccaccaactga 4256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 4490190 - 4490156
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaa 211  Q
    ||||||||||||||||||||||| |||||||||||    
T  4490190 tgagttccatccacaatgagtcaagaatccaccaa 4490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 4493252 - 4493286
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaa 211  Q
    ||||||||||||||||||||||| |||||||||||    
T  4493252 tgagttccatccacaatgagtcaagaatccaccaa 4493286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 4557422 - 4557456
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaa 211  Q
    ||||||||||||||||||||||| |||||||||||    
T  4557422 tgagttccatccacaatgagtcaagaatccaccaa 4557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 4592528 - 4592562
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaa 211  Q
    ||||||||||||||||||||||| |||||||||||    
T  4592528 tgagttccatccacaatgagtcaagaatccaccaa 4592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 4516619 - 4516656
Alignment:
Q  178 gagttccatccacaatgagtcacgaatccaccaactga 215  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  4516619 gagttccatccacaatgagtcaagaatcctccaactga 4516656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 3086717 - 3086751
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaa 211  Q
    ||||||||||||||||||||||| |||||||||||    
T  3086717 tgagttccatccacaatgagtcaagaatccaccaa 3086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 3519 - 3483
Alignment:
Q  177 tgagttccatccacaatgagtcacgaatccaccaact 213  Q
    ||||||||||||||||||||| | |||||||||||||    
T  3519 tgagttccatccacaatgagttaagaatccaccaact 3483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 24462263 - 24462307
Alignment:
Q  168 ttccaatactgagttccatccacaatgagtcacgaatccaccaac 212  Q
    |||||| |||||||||||||||||||||||||  ||| |||||||    
T  24462263 ttccaacactgagttccatccacaatgagtcaaaaatgcaccaac 24462307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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