View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_6 (Length: 755)

Name: NF16561_low_6
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_6
NF16561_low_6
[»] chr3 (4 HSPs)
chr3 (18-713)||(35744159-35744854)
chr3 (368-453)||(45146669-45146754)
chr3 (341-479)||(45004704-45004843)
chr3 (659-709)||(52393947-52393997)
[»] chr2 (9 HSPs)
chr2 (136-451)||(45512806-45513131)
chr2 (49-131)||(45512432-45512519)
chr2 (372-479)||(1300825-1300931)
chr2 (341-453)||(35063632-35063745)
chr2 (394-478)||(40056313-40056397)
chr2 (376-451)||(35064403-35064478)
chr2 (369-428)||(38356887-38356946)
chr2 (600-664)||(19028478-19028539)
chr2 (599-702)||(16209856-16209956)
[»] chr8 (9 HSPs)
chr8 (372-480)||(2623231-2623339)
chr8 (595-708)||(13636209-13636319)
chr8 (595-708)||(13736622-13736732)
chr8 (538-673)||(3423747-3423880)
chr8 (341-453)||(278954-279067)
chr8 (341-453)||(636785-636898)
chr8 (341-453)||(822588-822701)
chr8 (368-455)||(13231827-13231914)
chr8 (172-223)||(26126688-26126739)
[»] chr1 (6 HSPs)
chr1 (368-480)||(27702556-27702668)
chr1 (599-679)||(46536647-46536724)
chr1 (341-480)||(25476034-25476174)
chr1 (388-453)||(28651707-28651772)
chr1 (595-638)||(9552835-9552878)
chr1 (653-686)||(48509358-48509391)
[»] chr5 (3 HSPs)
chr5 (368-480)||(24153949-24154061)
chr5 (568-685)||(26402014-26402129)
chr5 (605-702)||(7611982-7612076)
[»] chr6 (2 HSPs)
chr6 (372-479)||(26674008-26674114)
chr6 (603-678)||(23131485-23131557)
[»] chr4 (3 HSPs)
chr4 (394-479)||(12007921-12008006)
chr4 (368-480)||(12007452-12007564)
chr4 (532-632)||(2392556-2392657)


Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 18 - 713
Target Start/End: Original strand, 35744159 - 35744854
Alignment:
Q  18 acatcacttccatttttccgtttgaagtgccattgcttgatgaagaaataagatgtccattttcttaattcgcaatgagacttaccaatcttgtcatgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744159 acatcacttccatttttccgtttgaagtgccattgcttgatgaagaaataagatgtccattttcttaattcgcaatgagacttaccaatcttgtcatgaa 35744258  T
Q  118 gatcccattctatgctgggagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744259 gatcccattctatgctgggagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgtta 35744358  T
Q  218 caaacccattactattctaatgttgtagggtttcttgatgatattagtggattgactcgattcaacaatgaaggtttgtccccacaattttaatagaaga 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744359 caaacccattactattctaatgctgtagggtttcttgatgatattagtggattgactcgattcaacaatgaaggtttgtccccacaattttaatagaaga 35744458  T
Q  318 ttctttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35744459 ttctttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtttatttgattaaaattcaagggaggttaatgttagttttga 35744558  T
Q  418 aattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccctagtttttcagagacacgaaagttttttccaataaataa 517  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  35744559 aattagaggggatgtcattgtcgttttaataaatcttaccgaagctggatgtaatttttcctagtttttcagagacacgaaagtttttttcaataaataa 35744658  T
Q  518 aattttattaagggttttgttaatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattggaatgcaagtttttacttttgtct 617  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35744659 aattttattaagggttttgttaatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaatgcaagtttttacttttgtct 35744758  T
Q  618 taccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaacattttccttttatt 713  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  35744759 taccaataattacacatatttaatttgttacaaaattacttattttaatactttaatcaatgctctaaggatactccttaacattttccttttatt 35744854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 45146669 - 45146754
Alignment:
Q  368 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacct 453  Q
    ||||||||||||||| |||| ||   ||||||||||| |||||||||| |||||||| |||||||   |||| |||||||||||||    
T  45146669 ggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacct 45146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 341 - 479
Target Start/End: Complemental strand, 45004843 - 45004704
Alignment:
Q  341 aaaattaacggtgttaatagagaataggg-tgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||| ||||||||||| ||  | | ||||||||||||| || |||| | |||||||||| |||| || ||| ||| || ||||| |||||||| |    
T  45004843 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgac 45004744  T
Q  440 gttttaataaaccttaccgaaggtggatgtaattttccct 479  Q
     ||||||||||||| |  | |||||  |||||||||||||    
T  45004743 attttaataaacctcagaggaggtgagtgtaattttccct 45004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 709
Target Start/End: Original strand, 52393947 - 52393997
Alignment:
Q  659 attttaatactttaatcaatgctccaatgatactccttaacattttccttt 709  Q
    ||||| ||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  52393947 atttttataatttaatcaatgctccaaggatactcattaacattctccttt 52393997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 136 - 451
Target Start/End: Original strand, 45512806 - 45513131
Alignment:
Q  136 gagactagtgattagaagacaataattaaaaagttaggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacccattactattct 235  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45512806 gagaccagtgattagaagacaaggatttaaaaattaggaatacacctatgtttcagttttgagagggaatgccaaaatgttacaaacccattactattat 45512905  T
Q  236 aatgttgtagggtttctt------------gatgatattagtggattgactc-gattcaacaatgaaggtttgtccccacaattt--taatagaagattc 320  Q
    ||| | ||| ||||||||            |||||||||| ||||||||||  |||||||||||||||||||||||||||||| |  ||| |||||||||    
T  45512906 aatct-gtaaggtttcttaaatgtttggttgatgatattaatggattgacttagattcaacaatgaaggtttgtccccacaatatgttaacagaagattc 45513004  T
Q  321 tttaagaaaaaattaagggaaaaattaacggtgttaatagagaatagggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaat 420  Q
    |||||||| |  |||| ||||||||||||  ||||||||||||   ||||| |||||||||||||||||| | | ||||||||||||||||||| ||||     
T  45513005 tttaagaagag-ttaacggaaaaattaac--tgttaatagagacg-gggtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaac 45513100  T
Q  421 tagaggggatgtcattgtcgttttaataaac 451  Q
    |||||||| ||||  ||||||||||||||||    
T  45513101 tagagggggtgtcgatgtcgttttaataaac 45513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 45512432 - 45512519
Alignment:
Q  49 attgcttgatgaagaaataag-atgtccattttcttaattcgcaatgagacttaccaatcttgtcat----gaagatcccattctatg 131  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||    |||||||||||||||||    
T  45512432 attgtttgatgaagaaataagtatgtccaatttcttaattcgcaatgagacttaccaatcttatcatgatcgaagatcccattctatg 45512519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 1300825 - 1300931
Alignment:
Q  372 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 471  Q
    ||||| ||||||||| ||||| ||||| ||||| |||| ||||| ||| |||||||| | | | |||| |||||||||||||||  ||||||  ||||||    
T  1300825 tttgtttatttgattgaaatttaaggg-ggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaa 1300923  T
Q  472 ttttccct 479  Q
    ||||||||    
T  1300924 ttttccct 1300931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 453
Target Start/End: Complemental strand, 35063745 - 35063632
Alignment:
Q  341 aaaattaacggtgttaatagagaataggg-tgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||| ||||||||||| ||  | | ||||||||||||| || |||| | |||||||||| |||| |||||| ||| |||||||  ||||| || |    
T  35063745 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgac 35063646  T
Q  440 gttttaataaacct 453  Q
     |||||||||||||    
T  35063645 attttaataaacct 35063632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 40056397 - 40056313
Alignment:
Q  394 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccc 478  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | |||| |||| |||||||| | || |||||  ||||||||||||    
T  40056397 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgtaattttccc 40056313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 35064403 - 35064478
Alignment:
Q  376 tctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaac 451  Q
    |||||||||| | |||| |||||| |||| ||| |||||| ||| |||||||||||| | |||| |||||||||||    
T  35064403 tctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaac 35064478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 38356946 - 38356887
Alignment:
Q  369 gtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagagggg 428  Q
    |||||||| ||||||||||||| | |||||||||||||||  ||||| ||| ||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggg 38356887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 664
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  600 aagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttatttta 664  Q
    ||||||||||||||||||||  |||||||||||| |||   ||||||||||| || |||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactt---tttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 702
Target Start/End: Original strand, 16209856 - 16209956
Alignment:
Q  599 caagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaa 698  Q
    ||||| ||||||||||||||| ||||| ||||||| |||   ||||||  ||| || ||||||||| |||||||| ||||||| ||| || |||| |||     
T  16209856 caagtgtttacttttgtcttagcaatagttacacaactt---tttgttttaaagttacttattttagtactttaaccaatgctacaaggacactcattag 16209952  T
Q  699 catt 702  Q
    ||||    
T  16209953 catt 16209956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 372 - 480
Target Start/End: Original strand, 2623231 - 2623339
Alignment:
Q  372 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 471  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||| |||||||||||||||  | | |  |||||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttaggggaagcagatgtaa 2623330  T
Q  472 ttttcccta 480  Q
    |||||||||    
T  2623331 ttttcccta 2623339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 595 - 708
Target Start/End: Complemental strand, 13636319 - 13636209
Alignment:
Q  595 aatgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactcc 694  Q
    |||||| |||||||||||||||||| |||||| |||||| ||||   ||||| |||| || |||||||||||||||||||||||| || || || ||||     
T  13636319 aatgcatgtttttacttttgtcttaacaataactacacaacttt---ttgttacaaagttacttattttaatactttaatcaatgttcaaaggacactca 13636223  T
Q  695 ttaacattttcctt 708  Q
    ||| ||||||||||    
T  13636222 ttatcattttcctt 13636209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 595 - 708
Target Start/End: Complemental strand, 13736732 - 13736622
Alignment:
Q  595 aatgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactcc 694  Q
    |||||| |||||||||||||||||| |||||| |||||| ||||   ||||| |||| || |||||||||||||||||||||||| || || || ||||     
T  13736732 aatgcatgtttttacttttgtcttaacaataactacacaacttt---ttgttacaaagttacttattttaatactttaatcaatgttcaaaggacactca 13736636  T
Q  695 ttaacattttcctt 708  Q
    ||| ||||||||||    
T  13736635 ttatcattttcctt 13736622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 673
Target Start/End: Complemental strand, 3423880 - 3423747
Alignment:
Q  538 taatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatct 636  Q
    ||||||||||| || | ||| | ||||| |||| |||||||| |||| |||| || ||| |||||||||||| |||||||||| |||||||||||||  |    
T  3423880 taatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaagt 3423781  T
Q  637 ttaatttgttgcaaaattgcttattttaatactttaa 673  Q
    |   || ||| ||||||| ||||||||| ||||||||    
T  3423780 t---ttagttacaaaattacttattttagtactttaa 3423747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 453
Target Start/End: Complemental strand, 279067 - 278954
Alignment:
Q  341 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  279067 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 278968  T
Q  440 gttttaataaacct 453  Q
     | |||||| ||||    
T  278967 atcttaatagacct 278954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 453
Target Start/End: Original strand, 636785 - 636898
Alignment:
Q  341 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  636785 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 636884  T
Q  440 gttttaataaacct 453  Q
     | |||||| ||||    
T  636885 atcttaatagacct 636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 453
Target Start/End: Original strand, 822588 - 822701
Alignment:
Q  341 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||| |||||||||| |||  | |||||||||| ||||||| |||| | ||||||| ||||||| |||||| ||| || ||||||||||| ||||    
T  822588 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtc 822687  T
Q  440 gttttaataaacct 453  Q
     | |||||| ||||    
T  822688 atcttaatagacct 822701  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 13231827 - 13231914
Alignment:
Q  368 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacctta 455  Q
    |||||||||  ||||||| | || | ||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| |||||||||    
T  13231827 ggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaacctta 13231914  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 26126688 - 26126739
Alignment:
Q  172 ggaatacacttacgtttcagttttgagagggaatgccaaaatgttacaaacc 223  Q
    |||||| ||||| ||||||||||||||||| || ||||||| ||||||||||    
T  26126688 ggaatatacttatgtttcagttttgagaggaaacgccaaaaggttacaaacc 26126739  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 480
Target Start/End: Complemental strand, 27702668 - 27702556
Alignment:
Q  368 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 467  Q
    |||||||||||||||||| |||| |||||||| |||| ||| | |||| |||||| || |||||||| |||| |||||||||||||||    || |||||    
T  27702668 ggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaaccttaggagagatggat 27702569  T
Q  468 gtaattttcccta 480  Q
    |||||||| ||||    
T  27702568 gtaatttttccta 27702556  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 599 - 679
Target Start/End: Complemental strand, 46536724 - 46536647
Alignment:
Q  599 caagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatg 679  Q
    ||||||||||||||||||||| |||||| |||||| ||||    | |||||||||| ||||||||||||||||||||||||    
T  46536724 caagtttttacttttgtcttatcaataactacacaactttg---tattgcaaaattacttattttaatactttaatcaatg 46536647  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 480
Target Start/End: Original strand, 25476034 - 25476174
Alignment:
Q  341 aaaattaacggtgttaatagagaatag-ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtc 439  Q
    ||||||||||||||||||||| ||  | ||||||||| ||||| || |||| |  |||||||||  ||| |||||| ||| |||||||  ||||| ||||    
T  25476034 aaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtc 25476133  T
Q  440 gttttaataaaccttaccgaaggtggatgtaattttcccta 480  Q
     ||||||||||||| |  | ||||| ||||||||| |||||    
T  25476134 attttaataaacctcaggggaggtgaatgtaatttccccta 25476174  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 28651772 - 28651707
Alignment:
Q  388 aaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaacct 453  Q
    ||||| ||||||||||||||| |||||| ||| |||||||| ||||| |||| |||||||| ||||    
T  28651772 aaatttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacct 28651707  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 638
Target Start/End: Complemental strand, 9552878 - 9552835
Alignment:
Q  595 aatgcaagtttttacttttgtcttaccaataattacacatcttt 638  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||    
T  9552878 aatgcaagtatttacttttgtcttatcaataattacacaccttt 9552835  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 48509391 - 48509358
Alignment:
Q  653 ttgcttattttaatactttaatcaatgctccaat 686  Q
    ||||||||||||||||||||||| ||||||||||    
T  48509391 ttgcttattttaatactttaatcgatgctccaat 48509358  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 24153949 - 24154061
Alignment:
Q  368 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 467  Q
    ||||||||| ||||||||  ||| | |||||||||||||||||||||| ||| |||||||| | | | |||| |||||||||||||||  | |||||  |    
T  24153949 ggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagt 24154048  T
Q  468 gtaattttcccta 480  Q
    ||| |||||||||    
T  24154049 gtagttttcccta 24154061  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 685
Target Start/End: Original strand, 26402014 - 26402129
Alignment:
Q  568 aatccattagtaaaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaat 666  Q
    |||||||||||| ||||  |||||||||| |||||| ||| |||||||||||| |||| |||||||| |||   ||| ||| |||||| ||||||||| |    
T  26402014 aatccattagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactt---tttattgaaaaattacttattttagt 26402110  T
Q  667 actttaatcaatgctccaa 685  Q
    ||| ||| |||||| ||||    
T  26402111 actctaaccaatgccccaa 26402129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 702
Target Start/End: Original strand, 7611982 - 7612076
Alignment:
Q  605 tttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaatgctccaatgatactccttaacatt 702  Q
    ||||||||||| ||| ||||||||| |||  |||   || |||| || ||||||||||||||||||||| ||||| || || ||||||| ||||||||    
T  7611982 tttacttttgttttagcaataattaaacaatttt---ttattgcgaagttgcttattttaatactttaaccaatgttcaaaggatactcattaacatt 7612076  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 26674008 - 26674114
Alignment:
Q  372 tttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaa 471  Q
    ||||| ||||||||| ||||| ||||| ||||| |||| ||||| ||| |||||||| | | | |||| |||||||||||||||  ||||||  ||||||    
T  26674008 tttgtttatttgattgaaatttaaggg-ggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaa 26674106  T
Q  472 ttttccct 479  Q
    ||||||||    
T  26674107 ttttccct 26674114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 23131485 - 23131557
Alignment:
Q  603 tttttacttttgtcttaccaataattacacatctttaatttgttgcaaaattgcttattttaatactttaatcaat 678  Q
    ||||||||||||| ||| |||||||||| || |||   ||| |||||||||| ||||||||| |||||||| ||||    
T  23131485 tttttacttttgttttagcaataattacgcaactt---tttattgcaaaattacttattttagtactttaaccaat 23131557  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 12007921 - 12008006
Alignment:
Q  394 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggatgtaattttccct 479  Q
    ||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| |||| ||||  | |||||  |||||||||||||    
T  12007921 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccct 12008006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 480
Target Start/End: Complemental strand, 12007564 - 12007452
Alignment:
Q  368 ggtgtttgtctatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaaccttaccgaaggtggat 467  Q
    ||||||||| |||||||| | || | ||| |||||||||||  ||||| ||| |||||||| ||||| |||| ||||| |||||| ||  | |||| | |    
T  12007564 ggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaaccataggggaggttggt 12007465  T
Q  468 gtaattttcccta 480  Q
    |||||||||||||    
T  12007464 gtaattttcccta 12007452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 632
Target Start/End: Original strand, 2392556 - 2392657
Alignment:
Q  532 ttttgttaatcagtgccctatgagtattagttaaaaaatccattagtaaaaatcatgtattg-gaatgcaagtttttacttttgtcttaccaataattac 630  Q
    ||||| ||| |||||||||| ||| ||| |||||  |||||||||||| |||   ||| |||  ||||||||||||||||||||||||  |||||| |||    
T  2392556 ttttgctaaccagtgccctaagagcattggttaaggaatccattagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactac 2392655  T
Q  631 ac 632  Q
    ||    
T  2392656 ac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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