View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_61 (Length: 391)

Name: NF16561_low_61
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_61
NF16561_low_61
[»] chr3 (55 HSPs)
chr3 (17-381)||(30692399-30692758)
chr3 (253-381)||(42601724-42601853)
chr3 (277-381)||(41890522-41890626)
chr3 (254-381)||(50033631-50033759)
chr3 (277-381)||(46572906-46573011)
chr3 (282-381)||(42601486-42601585)
chr3 (285-381)||(25450615-25450712)
chr3 (277-381)||(25832705-25832809)
chr3 (285-381)||(35423990-35424087)
chr3 (299-381)||(37410400-37410483)
chr3 (283-381)||(51427094-51427192)
chr3 (263-381)||(33795476-33795592)
chr3 (283-381)||(33748678-33748777)
chr3 (283-377)||(33934985-33935079)
chr3 (299-381)||(49823151-49823234)
chr3 (309-378)||(35853176-35853245)
chr3 (309-378)||(49710373-49710442)
chr3 (282-361)||(50017045-50017125)
chr3 (287-381)||(49407318-49407413)
chr3 (283-378)||(25790759-25790855)
chr3 (309-378)||(43022668-43022737)
chr3 (277-378)||(138962-139065)
chr3 (287-361)||(49147289-49147364)
chr3 (283-378)||(17466508-17466604)
chr3 (324-381)||(49357478-49357535)
chr3 (299-381)||(15493803-15493884)
chr3 (276-378)||(26165538-26165641)
chr3 (337-381)||(53722440-53722484)
chr3 (277-378)||(6048680-6048782)
chr3 (277-378)||(20139347-20139450)
chr3 (277-378)||(50415814-50415916)
chr3 (278-378)||(47701047-47701148)
chr3 (283-378)||(5845124-5845220)
chr3 (287-378)||(30418413-30418505)
chr3 (299-378)||(38572138-38572218)
chr3 (283-378)||(47144166-47144262)
chr3 (288-378)||(6832382-6832473)
chr3 (277-332)||(35472656-35472712)
chr3 (288-378)||(50734014-50734105)
chr3 (288-378)||(50778750-50778841)
chr3 (277-378)||(10426415-10426517)
chr3 (277-378)||(29701669-29701771)
chr3 (277-378)||(36178688-36178790)
chr3 (277-338)||(4045967-4046029)
chr3 (296-381)||(50176066-50176152)
chr3 (309-378)||(28410414-28410483)
chr3 (276-378)||(12974654-12974758)
chr3 (288-378)||(27847407-27847498)
chr3 (288-378)||(41183272-41183363)
chr3 (288-378)||(55026737-55026828)
chr3 (277-378)||(32120422-32120524)
chr3 (277-378)||(44084296-44084398)
chr3 (277-370)||(51999229-51999323)
chr3 (287-378)||(52000046-52000138)
chr3 (276-378)||(11908005-11908108)
[»] chr1 (32 HSPs)
chr1 (253-381)||(8464057-8464187)
chr1 (263-381)||(44334258-44334377)
chr1 (253-381)||(44651032-44651161)
chr1 (281-381)||(17783364-17783465)
chr1 (287-381)||(36302975-36303070)
chr1 (277-378)||(3755012-3755114)
chr1 (275-381)||(41542311-41542416)
chr1 (299-381)||(44451251-44451334)
chr1 (287-381)||(48729315-48729410)
chr1 (285-381)||(44929271-44929368)
chr1 (299-381)||(52933749-52933832)
chr1 (299-381)||(52941384-52941467)
chr1 (283-381)||(643803-643901)
chr1 (283-378)||(31468122-31468218)
chr1 (283-378)||(45239127-45239223)
chr1 (277-378)||(51494456-51494558)
chr1 (287-360)||(39149069-39149143)
chr1 (299-378)||(37691274-37691354)
chr1 (276-378)||(29523685-29523788)
chr1 (277-378)||(48388092-48388194)
chr1 (283-378)||(27630444-27630540)
chr1 (283-378)||(37420328-37420424)
chr1 (277-381)||(40500383-40500487)
chr1 (288-378)||(30878528-30878619)
chr1 (288-378)||(31159381-31159472)
chr1 (288-378)||(45456135-45456226)
chr1 (277-378)||(2478312-2478414)
chr1 (288-371)||(19578901-19578985)
chr1 (253-381)||(20584832-20584961)
chr1 (299-378)||(48404335-48404415)
chr1 (288-378)||(45623514-45623605)
chr1 (310-378)||(51520234-51520303)
[»] chr5 (35 HSPs)
chr5 (277-381)||(41263347-41263452)
chr5 (277-381)||(14278814-14278919)
chr5 (277-381)||(8176284-8176389)
chr5 (249-381)||(10569791-10569922)
chr5 (250-381)||(15972525-15972657)
chr5 (251-381)||(25652769-25652903)
chr5 (285-379)||(8681271-8681366)
chr5 (277-381)||(41152987-41153092)
chr5 (299-381)||(4577012-4577095)
chr5 (290-381)||(27407725-27407819)
chr5 (277-381)||(25032338-25032443)
chr5 (310-381)||(11954796-11954867)
chr5 (285-378)||(31013828-31013922)
chr5 (277-381)||(42608025-42608130)
chr5 (299-381)||(34918459-34918540)
chr5 (276-365)||(3454720-3454811)
chr5 (277-378)||(19241301-19241403)
chr5 (277-381)||(37882412-37882515)
chr5 (287-378)||(32976560-32976652)
chr5 (277-381)||(34529363-34529468)
chr5 (277-378)||(4938170-4938273)
chr5 (277-378)||(27942476-27942578)
chr5 (270-378)||(12912854-12912957)
chr5 (299-378)||(27407026-27407107)
chr5 (287-378)||(40888889-40888981)
chr5 (276-378)||(29618998-29619101)
chr5 (276-378)||(39008464-39008567)
chr5 (277-381)||(42317873-42317978)
chr5 (287-355)||(9274457-9274525)
chr5 (299-378)||(23649152-23649232)
chr5 (299-378)||(23809339-23809419)
chr5 (287-374)||(25670894-25670982)
chr5 (276-378)||(23089502-23089605)
chr5 (288-378)||(30648097-30648188)
chr5 (288-378)||(42806984-42807075)
[»] chr8 (36 HSPs)
chr8 (251-381)||(41477142-41477273)
chr8 (253-381)||(34955647-34955776)
chr8 (277-381)||(30470799-30470904)
chr8 (277-381)||(18029480-18029585)
chr8 (277-381)||(26632134-26632239)
chr8 (277-381)||(36912402-36912507)
chr8 (282-381)||(17741702-17741802)
chr8 (277-381)||(8609962-8610067)
chr8 (251-381)||(30289711-30289846)
chr8 (277-381)||(4625475-4625580)
chr8 (277-381)||(29637136-29637241)
chr8 (283-381)||(42860706-42860804)
chr8 (277-381)||(38584875-38584980)
chr8 (254-381)||(39811039-39811168)
chr8 (283-381)||(5212283-5212381)
chr8 (283-381)||(26749389-26749488)
chr8 (299-381)||(13814954-13815037)
chr8 (264-381)||(24431847-24431962)
chr8 (277-381)||(7990416-7990521)
chr8 (283-381)||(5735279-5735377)
chr8 (283-378)||(43618333-43618429)
chr8 (276-378)||(43524375-43524478)
chr8 (277-381)||(35931847-35931952)
chr8 (287-378)||(1958164-1958256)
chr8 (288-378)||(12272466-12272557)
chr8 (276-378)||(40283459-40283562)
chr8 (288-378)||(43525073-43525164)
chr8 (288-378)||(45101009-45101100)
chr8 (285-378)||(35099428-35099522)
chr8 (299-378)||(42859932-42860012)
chr8 (298-378)||(44149877-44149957)
chr8 (276-378)||(26244481-26244584)
chr8 (278-356)||(23353189-23353268)
chr8 (297-378)||(23549718-23549800)
chr8 (299-378)||(31129486-31129567)
chr8 (276-378)||(13947350-13947453)
[»] scaffold0100 (1 HSPs)
scaffold0100 (277-381)||(30519-30624)
[»] chr7 (32 HSPs)
chr7 (253-381)||(24793453-24793582)
chr7 (283-381)||(30630795-30630893)
chr7 (277-381)||(22737576-22737681)
chr7 (277-377)||(22191207-22191307)
chr7 (280-381)||(25218789-25218891)
chr7 (283-381)||(21654839-21654937)
chr7 (263-381)||(35193100-35193219)
chr7 (309-378)||(43571078-43571147)
chr7 (283-381)||(48984900-48984998)
chr7 (307-381)||(26013180-26013253)
chr7 (276-381)||(38970016-38970124)
chr7 (276-378)||(26812098-26812201)
chr7 (288-378)||(33078769-33078860)
chr7 (287-381)||(114486-114581)
chr7 (287-378)||(36518511-36518603)
chr7 (295-378)||(40302475-40302559)
chr7 (263-378)||(43202120-43202240)
chr7 (277-378)||(47159479-47159580)
chr7 (283-378)||(5813090-5813186)
chr7 (283-378)||(35029093-35029189)
chr7 (313-381)||(25038574-25038642)
chr7 (288-378)||(30566597-30566688)
chr7 (288-378)||(42881355-42881446)
chr7 (287-332)||(32748793-32748839)
chr7 (287-378)||(37887843-37887935)
chr7 (287-378)||(39769725-39769817)
chr7 (276-378)||(32130255-32130358)
chr7 (298-371)||(38351587-38351660)
chr7 (299-378)||(30720128-30720208)
chr7 (277-310)||(37888538-37888571)
chr7 (276-378)||(20354208-20354311)
chr7 (276-378)||(45549603-45549706)
[»] chr4 (45 HSPs)
chr4 (257-381)||(19409097-19409222)
chr4 (277-381)||(47750206-47750310)
chr4 (287-381)||(39049064-39049159)
chr4 (283-381)||(31848755-31848853)
chr4 (287-381)||(54356877-54356972)
chr4 (281-381)||(40596743-40596844)
chr4 (263-378)||(34564096-34564212)
chr4 (283-381)||(53184077-53184175)
chr4 (285-381)||(36656555-36656649)
chr4 (277-378)||(16020833-16020935)
chr4 (283-378)||(2215266-2215362)
chr4 (285-381)||(33526711-33526808)
chr4 (283-381)||(10089840-10089938)
chr4 (288-381)||(39533262-39533356)
chr4 (283-378)||(46917495-46917591)
chr4 (313-378)||(55408553-55408618)
chr4 (288-378)||(33604654-33604745)
chr4 (276-378)||(45081396-45081499)
chr4 (277-378)||(3533291-3533393)
chr4 (277-378)||(6290586-6290688)
chr4 (287-381)||(12158134-12158229)
chr4 (277-378)||(34199253-34199355)
chr4 (299-381)||(39113736-39113819)
chr4 (277-378)||(40721021-40721123)
chr4 (277-381)||(51392217-51392320)
chr4 (253-381)||(55897-56025)
chr4 (299-378)||(23389913-23389993)
chr4 (276-378)||(13094374-13094477)
chr4 (276-332)||(17329943-17329999)
chr4 (288-378)||(33523267-33523359)
chr4 (288-378)||(38173552-38173643)
chr4 (276-378)||(48403884-48403987)
chr4 (288-378)||(48506590-48506681)
chr4 (288-378)||(55560463-55560554)
chr4 (277-378)||(3618437-3618539)
chr4 (277-378)||(8991769-8991871)
chr4 (277-332)||(52772740-52772795)
chr4 (299-378)||(52017352-52017432)
chr4 (276-378)||(19272768-19272871)
chr4 (276-378)||(35809148-35809251)
chr4 (277-378)||(23540410-23540512)
chr4 (288-378)||(33077858-33077948)
chr4 (299-381)||(18469348-18469432)
chr4 (290-338)||(56054016-56054065)
chr4 (277-381)||(39418300-39418401)
[»] scaffold0012 (1 HSPs)
scaffold0012 (251-381)||(123975-124104)
[»] chr2 (32 HSPs)
chr2 (255-381)||(927873-928000)
chr2 (280-381)||(37245491-37245593)
chr2 (287-381)||(31192965-31193060)
chr2 (277-381)||(1987106-1987211)
chr2 (282-381)||(9074206-9074305)
chr2 (253-381)||(5146692-5146822)
chr2 (285-381)||(38901715-38901812)
chr2 (283-378)||(4296756-4296852)
chr2 (288-378)||(6362952-6363043)
chr2 (283-378)||(12855012-12855108)
chr2 (283-378)||(30822568-30822664)
chr2 (286-381)||(31174167-31174262)
chr2 (299-378)||(36855758-36855838)
chr2 (277-378)||(13151468-13151571)
chr2 (283-378)||(8852050-8852146)
chr2 (283-378)||(24997073-24997169)
chr2 (277-378)||(14152051-14152154)
chr2 (277-378)||(22351599-22351701)
chr2 (276-377)||(36209460-36209562)
chr2 (261-381)||(2780718-2780839)
chr2 (276-332)||(17929286-17929343)
chr2 (285-381)||(39433993-39434090)
chr2 (288-378)||(1073068-1073159)
chr2 (276-378)||(17485803-17485906)
chr2 (277-375)||(43021728-43021827)
chr2 (276-381)||(39490129-39490235)
chr2 (288-378)||(14382965-14383056)
chr2 (277-343)||(6333397-6333464)
chr2 (277-378)||(7588487-7588591)
chr2 (287-332)||(1308728-1308774)
chr2 (290-338)||(36526821-36526870)
chr2 (288-378)||(9117810-9117901)
[»] chr6 (16 HSPs)
chr6 (283-381)||(29428499-29428598)
chr6 (282-381)||(6380470-6380569)
chr6 (277-381)||(8669875-8669980)
chr6 (283-378)||(631509-631605)
chr6 (309-378)||(6725609-6725678)
chr6 (287-378)||(24933266-24933359)
chr6 (277-378)||(8660544-8660646)
chr6 (310-378)||(8218964-8219032)
chr6 (283-378)||(17961248-17961344)
chr6 (283-378)||(34328272-34328368)
chr6 (288-378)||(10883868-10883959)
chr6 (288-378)||(30446240-30446331)
chr6 (277-381)||(22627821-22627927)
chr6 (283-378)||(197795-197891)
chr6 (299-378)||(34838588-34838668)
chr6 (288-378)||(24348429-24348520)
[»] scaffold0362 (1 HSPs)
scaffold0362 (288-378)||(5307-5398)
[»] scaffold0054 (1 HSPs)
scaffold0054 (288-378)||(57727-57818)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 30692758 - 30692399
Alignment:
Q  17 agcatcagcaccactgcacctgatatgtgtcctcctgcttacatgttgttggtacgaaagaaggttttgcaggtgaatgtacnnnnnnngaaggaggatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  30692758 agcatcagcaccactgcacctgatatgtgtcctcctgcttacatgttgttggtacgaaagaaggttttgcaggtgaatgtacaaaaaaagaaggaggatt 30692659  T
Q  117 ccaatgcataaaagggagtgtacnnnnnnngaagaaggattacaatgcataaaaggacgcatcacgcaccaaaaaaggacgcatcatcgttacttcttcc 216  Q
    |||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30692658 ccaatgcataaaagggagtgtacaaaaaaagaagaaggattccaatgcataaaaggacgcatcacgcaacaaaaaaggacgcatcatcgttacttcttcc 30692559  T
Q  217 cccac----gtatgcacgtaaatagtagtattaactttttagaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattccaa 312  Q
    |||||    ||||||||||||||||||   |||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| |||    
T  30692558 cccacccacgtatgcacgtaaatagta---ttaactttttagaccatctcgaatggtttttgctttcaacaccattcaatattcattttttcaatttcaa 30692462  T
Q  313 cactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||| |||| ||||||||| |||||| |     |||||||||||| || ||||| |||||||||||||    
T  30692461 cactcaacatcattttctctctcttatac-----tcattcaacttt-accctctctaatggtttttcat 30692399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 42601724 - 42601853
Alignment:
Q  253 agaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcatt 351  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | |||||    
T  42601724 agaccatctccaatggtttttcctttcaacaccattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcatt 42601823  T
Q  352 caacttttactctctccaatggtttttcat 381  Q
    ||||||||||  ||||||||||||||||||    
T  42601824 caacttttaccttctccaatggtttttcat 42601853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 41890522 - 41890626
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||||||||||||| || |||||||||| |||||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||    
T  41890522 ttcaacaccattcaacat-cactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtt 41890620  T
Q  376 tttcat 381  Q
    ||||||    
T  41890621 tttcat 41890626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 50033631 - 50033759
Alignment:
Q  254 gaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattc 352  Q
    |||||||||||||| ||||  |||| |||||||||||||||||| ||||| |||| |||||| || |||| ||||| ||| |||||||||| | ||||||    
T  50033631 gaccatctccaatggttttcccttttaacaccattcaacatccacttttttaatttccaacattctacatcattttttctctcttattcaacactcattc 50033730  T
Q  353 aacttttactctctccaatggtttttcat 381  Q
    |||||||||||||||||||| ||||||||    
T  50033731 aacttttactctctccaatgatttttcat 50033759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 46573011 - 46572906
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||| |||    
T  46573011 ttcaacaacattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaagactcattcaacttttaccctctccaatagtt 46572912  T
Q  376 tttcat 381  Q
    ||||||    
T  46572911 tttcat 46572906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 42601585 - 42601486
Alignment:
Q  282 caccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttca 380  Q
    |||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  42601585 caccattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttca 42601487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 25450712 - 25450615
Alignment:
Q  285 cattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||||||||| ||||||||||||||||  ||||||||| |||||||||    
T  25450712 cattcaacacccattttttcaattcccaacgctccacatcattttctctctcttattcaacattcattcaacttttatcctctccaatagtttttcat 25450615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 25832809 - 25832705
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||| ||| |||||||||||| |||||| ||||| ||||||||| |||||||||| | ||||||||||||||| | |||||||||||    
T  25832809 ttcaacaccattcaaca-ccactttttcaattcccaacacttcacatcattttctctctcttattcaacactcattcaacttttaccccctccaatggtt 25832711  T
Q  376 tttcat 381  Q
    ||||||    
T  25832710 tttcat 25832705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 35424087 - 35423990
Alignment:
Q  285 cattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||| | |||||| |||||||| ||||| |||||||||||||    
T  35424087 cattcaacatccattttttcaattcccaacactccacatcattttttctctcttattcaacactcattcgacttttaccctctcaaatggtttttcat 35423990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 37410483 - 37410400
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  37410483 tttttcaattcccaatactccacatcattttctctctcttattcaacattcattcaacttttaccctctccaatggtttttcat 37410400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 51427094 - 51427192
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||||||||  ||||||||||||||||||    
T  51427094 accattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccatctccaatggtttttcat 51427192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 33795592 - 33795476
Alignment:
Q  263 caatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    ||||| ||||| |||| |||||||||||||||||| ||||| |||||| |||| ||| ||||   ||||||||||||||||| | |||||||||||||||    
T  33795592 caatggttttttcttttaacaccattcaacatccacttttttaattcccaacaatcctcatt---ttctctttcttattcaacactcattcaacttttac 33795496  T
Q  362 tctctccaatggtttttcat 381  Q
    ||||| |||| |||||||||    
T  33795495 tctcttcaatagtttttcat 33795476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 33748678 - 33748777
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| | |||||||||||| |||||||||||||| ||||||||| | ||| |||| | |||||||||||||||  ||||||||||||||||||    
T  33748678 accattcaacacctattttttcaatttccaacactccacatcattttctctcttttactcaacactcattcaacttttaccttctccaatggtttttcat 33748777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 33934985 - 33935079
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttt 377  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||| ||||||||||| |||||||||||||||    
T  33934985 accattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacactcaatcaacttttaccctctccaatggtttt 33935079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 49823234 - 49823151
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||||||||  ||||||||||||||||||    
T  49823234 tttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccatctccaatggtttttcat 49823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 35853245 - 35853176
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| |||||||||||||||    
T  35853245 ccaacactccacatcattttctctctcttattcaacactcattcaacttttactatctccaatggttttt 35853176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 49710442 - 49710373
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| |||||||||||||||    
T  49710442 ccaacactccacatcattttctctctcttattcaacactcattcaacttttactatctccaatggttttt 49710373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 50017045 - 50017125
Alignment:
Q  282 caccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    |||||||||| ||||| |||||||||||| ||||||| |||| |||||||||||||||||||| | |||||||||||||||    
T  50017045 caccattcaaaatccactttttcaattcccaacactctacatcattttctctttcttattcaacactcattcaacttttac 50017125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 49407413 - 49407318
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||| | |||||| ||| ||||||||||| | |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  49407413 ttcaacatccactttttcaatttcgaacacttcaccttattttctctcttttattcaatactcattcaacttttaccttcttcaatggtttttcat 49407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 25790855 - 25790759
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  25790855 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttac-ctctccaatggttttt 25790759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 43022668 - 43022737
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| ||| |||||||||||    
T  43022668 ccaacactccacatcattttctctctcttattcaacactcattcaacttttactatcttcaatggttttt 43022737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 138962 - 139065
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| || |||||||||  |||||||||||| |||||||||||| ||||| ||| ||||| ||||| | ||||||||||||||| |||||||||| |    
T  138962 ttcaacaacactcaacatccgctttttcaattcccaacactccacatcattttgtctctcttaattcaacactcattcaacttttaccctctccaatgat 139061  T
Q  375 tttt 378  Q
    ||||    
T  139062 tttt 139065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 49147364 - 49147289
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    ||||||||| | |||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||||||||    
T  49147364 ttcaacatctactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttac 49147289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 17466508 - 17466604
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  17466508 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 17466604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 49357535 - 49357478
Alignment:
Q  324 attttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  49357535 attttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcat 49357478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 15493884 - 15493803
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| | |||||||  ||||||||| |||||||||||||||||  ||||||||| ||||||||    
T  15493884 tttttcaattcccaacactccacatcactttctct--cttattcaacattcattcaacttttaccatctccaatgatttttcat 15493803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 26165641 - 26165538
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| |||||||||||||| ||||||||| || | |||||| |  ||||||| |||||| |||||||||||    
T  26165641 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacacccattcaatttttac-ctctccaatgg 26165543  T
Q  374 ttttt 378  Q
    |||||    
T  26165542 ttttt 26165538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 53722440 - 53722484
Alignment:
Q  337 tattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  53722440 tattcaatatttattcaacttttactctctccaatggtttttcat 53722484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 6048782 - 6048680
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  6048782 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 6048684  T
Q  375 tttt 378  Q
    ||||    
T  6048683 tttt 6048680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 20139347 - 20139450
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| || |||| | ||| ||||||||||| ||||||| ||||| ||||||||| ||||| ||||| | |||||||||||||||  |||||||||||    
T  20139347 ttcaacaacactcaatacccactttttcaattctcaacacttcacatcattttctctctcttaattcaacactcattcaacttttaccttctccaatggt 20139446  T
Q  375 tttt 378  Q
    ||||    
T  20139447 tttt 20139450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 50415916 - 50415814
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||| |||||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  50415916 ttcaacaaccttcaacacccactttttcaatttccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 50415818  T
Q  375 tttt 378  Q
    ||||    
T  50415817 tttt 50415814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 47701148 - 47701047
Alignment:
Q  278 tcaacaccattcaacatccattttttcaattc-caacactccacattattttct-ctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||| || |||||| ||| ||||||||||| ||||||||||||| ||||| | || |||||||||| | ||||| |||||||||||||||| ||||||    
T  47701148 tcaacaacactcaacacccactttttcaattctcaacactccacatcatttttttctctcttattcaacactcattaaacttttactctctcc-atggtt 47701050  T
Q  376 ttt 378  Q
    |||    
T  47701049 ttt 47701047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 5845220 - 5845124
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||| |||||||||||||| ||||| ||| |||| |||||| | |||||||| ||||||  |||||||||||||||    
T  5845220 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac-atctccaatggttttt 5845124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 30418505 - 30418413
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  30418505 ttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 30418413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 38572218 - 38572138
Alignment:
Q  299 tttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| ||  |||||| |||||| ||||||||||||||||    
T  38572218 tttttcaattctcaacactccacattattttctctctcttaattcaacatctattcaatttttac-ctctccaatggttttt 38572138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 47144166 - 47144262
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | | |||||| |||||| ||||||||| ||||||    
T  47144166 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacttattcaatttttac-ctctccaatagttttt 47144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 6832382 - 6832473
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctct-ttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| | || | |||||| | |||||||| ||||| |||||||||||||||||    
T  6832382 tcaacatccactttttcaattcccaacactccacatcattttctttcttttaattcaacactcattcaattttta-tctctccaatggttttt 6832473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 35472712 - 35472656
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctct 332  Q
    ||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  35472712 ttcaatacccttcaacatccactttttcaattcccaacactccacattattttctct 35472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 50734014 - 50734105
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||| ||||||||| ||||||||| ||||| |||||||   |||||| |||||| ||||||||||||||||    
T  50734014 tcaacatccactttttcaatttccaaaactccacatcattttctctctcttaattcaatacctattcaatttttac-ctctccaatggttttt 50734105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 50778841 - 50778750
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||| ||||||||| ||||||||| ||||| |||||||   |||||| |||||| ||||||||||||||||    
T  50778841 tcaacatccactttttcaatttccaaaactccacatcattttctctctcttaattcaatacctattcaatttttac-ctctccaatggttttt 50778750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 10426517 - 10426415
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctct-ttcttattcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| |||||||||||||| |||||||||||||| ||||||||| || | ||| ||||  ||||||| |||||| |||||||||| |    
T  10426517 ttcaacaaccttcaacacccattttttcaattcccaacactccacatcattttctctcttttaatttaatacccattcaatttttac-ctctccaatgat 10426419  T
Q  375 tttt 378  Q
    ||||    
T  10426418 tttt 10426415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 29701669 - 29701771
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| | ||||||||||    
T  29701669 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ccctccaatggt 29701767  T
Q  375 tttt 378  Q
    ||||    
T  29701768 tttt 29701771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 36178790 - 36178688
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||||| ||||||| ||| |||||||||| |||||||| || || ||||||||| || | |||||| || ||||||| |||||| ||||||||||||    
T  36178790 ttcaacacccttcaacacccactttttcaattcccaacacttcaaatcattttctctctcataattcaacatccattcaatttttac-ctctccaatggt 36178692  T
Q  375 tttt 378  Q
    ||||    
T  36178691 tttt 36178688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 4045967 - 4046029
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctta 338  Q
    ||||||| | ||||||||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  4045967 ttcaacaaccttcaacatccactttttcaattcccaacactccacatcattttctctctctta 4046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 50176152 - 50176066
Alignment:
Q  296 cattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||| |||||||||||| ||||| ||| ||||||||||     |||||||||||||| ||| | ||||||||||||    
T  50176152 cattttttcaattcccaacactccacatcattttatctctcttattcaacgcatattcaacttttactttcttcgatggtttttcat 50176066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 28410414 - 28410483
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| | ||||||||| | |||||||| | |||||||||||||||  ||||||||| |||||    
T  28410414 ccaacactccacgtcattttctctcttttattcaacactcattcaacttttaccatctccaatgattttt 28410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 12974654 - 12974758
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||  ||||   |||||||||||    
T  12974654 tttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcatttttttacctctccaatgg 12974753  T
Q  374 ttttt 378  Q
    |||||    
T  12974754 ttttt 12974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 27847407 - 27847498
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||| |||| |||||| |  |||| || |||||| |||| |||||||||||    
T  27847407 tcaacatccactttttcaatttccaacactccacatcattttctctctcttaattcaacacccatttaatttttac-ctcttcaatggttttt 27847498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 41183272 - 41183363
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||| ||| |||||| ||||||||||||||||    
T  41183272 tcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatacaatttttac-ctctccaatggttttt 41183363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 55026737 - 55026828
Alignment:
Q  288 tcaacatccattttttcaa-ttccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| |||||||||||| || ||||||| ||| | ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  55026737 tcaacacccattttttcaattttcaacacttcacttcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 55026828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 32120524 - 32120422
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  | ||||| |||||| ||||||||| ||    
T  32120524 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatagt 32120426  T
Q  375 tttt 378  Q
    ||||    
T  32120425 tttt 32120422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 44084296 - 44084398
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  | ||||| |||||| ||||||||| ||    
T  44084296 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatagt 44084394  T
Q  375 tttt 378  Q
    ||||    
T  44084395 tttt 44084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 51999323 - 51999229
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaa 370  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| ||||| |||||||||    
T  51999323 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaattttta-tctctccaa 51999229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 52000138 - 52000046
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||  ||||||| |||||| |||||||||||| ||||||||| || | |||||| ||| |||||| ||||||  |||||||||||||||    
T  52000138 ttcaacatttatttttttaattcccaacactccacatcattttctctctcataattcaacatttattcaatttttac-atctccaatggttttt 52000046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 11908005 - 11908108
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||| |||||||||||||| ||||| ||| || | |||||| |  ||||||| |||||| |||| ||||||    
T  11908005 tttcaatacccttcaacacccactttttcaatttccaacactccacatcattttttctctcataattcaacacccattcaatttttac-ctcttcaatgg 11908103  T
Q  374 ttttt 378  Q
    |||||    
T  11908104 ttttt 11908108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 8464057 - 8464187
Alignment:
Q  253 agaccatctccaatgatttttgctttcaa-caccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcat 350  Q
    ||||||||  ||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||| | ||||    
T  8464057 agaccatcaacaatgattttttctttcaaacaccattcaacatccactttttcaattctcaacactccacatcattttctctctcttattcaacactcat 8464156  T
Q  351 tcaacttttactctctccaatggtttttcat 381  Q
    |||| ||||||||||||||||||||||||||    
T  8464157 tcaatttttactctctccaatggtttttcat 8464187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 44334258 - 44334377
Alignment:
Q  263 caatgatttttgctttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    ||||| ||||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||| | |||||||||||||||    
T  44334258 caatggttttttcattcaataccattcaacatccactttttcaattctcaacactccacatcattttctctctcttattcaacactcattcaacttttac 44334357  T
Q  362 tctctccaatggtttttcat 381  Q
    ||||||||||||||||||||    
T  44334358 tctctccaatggtttttcat 44334377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 44651032 - 44651161
Alignment:
Q  253 agaccatctccaatgatttttg-ctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcat 350  Q
    |||||||| |||||| |||||  ||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||    
T  44651032 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacactcat 44651130  T
Q  351 tcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||||||||||||    
T  44651131 tcaacttttaccctctccaatggtttttcat 44651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 17783364 - 17783465
Alignment:
Q  281 acaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttc 379  Q
    ||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  17783364 acaccattcaacatccacttttttaattcccaacattccacatcattttctctctcttattcaacactcattcaacttttactctctccaatggtttttc 17783463  T
Q  380 at 381  Q
    ||    
T  17783464 at 17783465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 36302975 - 36303070
Alignment:
Q  287 ttcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |   ||||||||||||| |||||||||||||||||||    
T  36302975 ttcaacatccattttttcaattttcaacactccacattattttctctttcttattcaacacatattcaacttttaccctctccaatggtttttcat 36303070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 3755114 - 3755012
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||||||||| |||||| ||||||||||| |||||||| |||| ||||||||| |||||||||| ||||| ||||||||||| ||||||||| |||    
T  3755114 ttcaacaccattcagcatccactttttcaattctcaacactctacatcattttctctctcttattcaacattcaatcaacttttaccctctccaatagtt 3755015  T
Q  376 ttt 378  Q
    |||    
T  3755014 ttt 3755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 41542311 - 41542416
Alignment:
Q  275 ctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatgg 373  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||| || |||||| |||||||||  | ||||||||||||||  |||||||||||    
T  41542311 ctttcaacatcattcaacatccactttttcaattcccaacactccacatcatattctctctcttattca--actcattcaacttttatcctctccaatgg 41542408  T
Q  374 tttttcat 381  Q
    ||||||||    
T  41542409 tttttcat 41542416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 44451334 - 44451251
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  44451334 tttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcat 44451251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 48729315 - 48729410
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||||||||||   |||||| ||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||    
T  48729315 ttcaacatccattttttcaatttttaacacttcacatcattttctctttcttattcaacacacattcaacttttaccctctccaatggtttttcat 48729410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 44929368 - 44929271
Alignment:
Q  285 cattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||||||||||||| ||||| | || || ||||||||| | |||||||| | ||||||||||||||| |||||||||||||||||||    
T  44929368 cattcaacatccattttttcaattctcaacatttcaaatcattttctctcttttattcaacactcattcaacttttaccctctccaatggtttttcat 44929271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 52933832 - 52933749
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  52933832 tttttcaattcctaacactccacgtcattttctctctcttattcaacactcattcaacttttacactctccaatggtttttcat 52933749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 52941467 - 52941384
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  52941467 tttttcaattcctaacactccacgtcattttctctctcttattcaacactcattcaacttttacactctccaatggtttttcat 52941384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 643901 - 643803
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||||||| |||||||||| | ||||||||| |||||||||| | ||||||||| ||||| ||||| |||||||||||||    
T  643901 accattcaaca-ccactttttcaattcccaacactccacgtcattttctctctcttattcaacactcattcaacatttaccctctcaaatggtttttcat 643803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 31468122 - 31468218
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |||||||||| |||||| ||||||||| ||||||    
T  31468122 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacattcattcaatttttac-ctctccaatagttttt 31468218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 45239127 - 45239223
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| || |||||||| | |||||||| |||||| ||||||||||||||||    
T  45239127 accattcaacacccactttttcaattcccaacactccacatcattttctctctctttattcaacactcattcaatttttac-ctctccaatggttttt 45239223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 51494558 - 51494456
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| ||||| ||||| ||||||||||||| ||||||||| |||| |||||| |||||||||| |||||| ||||||||||||    
T  51494558 ttcaacaaccttcaacacccacttttttaattctcaacactccacatcattttctctctcttaattcaacattcattcaatttttac-ctctccaatggt 51494460  T
Q  375 tttt 378  Q
    ||||    
T  51494459 tttt 51494456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 39149069 - 39149143
Alignment:
Q  287 ttcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaactttta 360  Q
    ||||||| ||||||||||  ||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  39149069 ttcaacacccattttttctcttctcaacactctacatcattttctctatcttattcaatattcattcaactttta 39149143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 37691354 - 37691274
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||    
T  37691354 tttttcaattcccaacactccacattattttctctctcttaattcaacatccattcaatttttac-ctctccaatggttttt 37691274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 29523685 - 29523788
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatgg 373  Q
    |||||||||| ||||||| ||| |||||||||| |||||||||||||| ||||||||| |||| |||||| || ||||||| ||||||  |||||||||     
T  29523685 tttcaacacccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacatccattcaatttttac-atctccaatga 29523783  T
Q  374 ttttt 378  Q
    |||||    
T  29523784 ttttt 29523788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 48388194 - 48388092
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  48388194 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 48388096  T
Q  375 tttt 378  Q
    ||||    
T  48388095 tttt 48388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 27630540 - 27630444
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||| |||||||||||||| ||||| ||| |||| |||||| | |||||||| ||||||  |||||||||||||||    
T  27630540 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac-atctccaatggttttt 27630444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 37420424 - 37420328
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||| |||||||||||||| ||||| ||| |||| |||||| | |||||||| ||||||  |||||||||||||||    
T  37420424 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac-atctccaatggttttt 37420328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 40500383 - 40500487
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| |||| |||| ||| ||||||| |||| |||||| ||||| ||||||||  |||||||||| | ||||| ||||||||| ||||||| |||||    
T  40500383 ttcaacatcatttaacacccactttttcagttccgaacacttcacat-attttctccctcttattcaacactcatttaacttttaccctctccagtggtt 40500481  T
Q  376 tttcat 381  Q
    ||||||    
T  40500482 tttcat 40500487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 30878619 - 30878528
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||| |||||||||||||| ||||||||| |||| |||||| || ||||||| |||||| ||||||||| ||||||    
T  30878619 tcaacacccactttttcaatttccaacactccacatcattttctctctcttaattcaacatccattcaatttttac-ctctccaatagttttt 30878528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 31159381 - 31159472
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  31159381 tcaacatctactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 31159472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 45456226 - 45456135
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||| ||||    
T  45456226 tcaacacccactttttcaattcccaacactccacataattttctctctcttaattcaacactcattcaatttttac-ctctccaatggatttt 45456135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 2478414 - 2478312
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  | ||||| |||||| ||||||||||||    
T  2478414 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatggt 2478316  T
Q  375 tttt 378  Q
    ||||    
T  2478315 tttt 2478312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 19578985 - 19578901
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaat 371  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||    
T  19578985 tcaacatccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaat 19578901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 20584961 - 20584832
Alignment:
Q  253 agaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcatt 351  Q
    ||||||| | ||||||||||| | |||||||  | ||||||  || |||||||||||| |||||||||||| ||||||||  ||||||| || | | |||    
T  20584961 agaccatttacaatgatttttccattcaacaaaactcaacacacactttttcaattcccaacactccacatcattttctcactcttatttaacacttatt 20584862  T
Q  352 caacttttactctctccaatggtttttcat 381  Q
    |||||||||   ||||||| | ||||||||    
T  20584861 caacttttatcttctccaaagatttttcat 20584832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 48404335 - 48404415
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| |||||||||| |||||    
T  48404335 tttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatgattttt 48404415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 45623605 - 45623514
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||| |||| |||||| | ||||| || ||||| ||||||| |||||||||    
T  45623605 tcaacatctactttttcaattcctaacactccacatcattttctctctcttaattcaacactcatttaattttta-tctctcctatggttttt 45623514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 51520234 - 51520303
Alignment:
Q  310 caacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||||| ||||| ||| ||||| || || | | ||||||||||||| ||||||||||||||||    
T  51520234 caacactccacatcattttttctctcttaattaaacacttattcaacttttaccctctccaatggttttt 51520303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 41263347 - 41263452
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  41263347 ttcaacaccattcaacatccactttttcaattcccaacgctccacatcattttctctctcttattcaacattcattcaacttttaccctctccaatggtt 41263446  T
Q  376 tttcat 381  Q
    ||||||    
T  41263447 tttcat 41263452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 14278814 - 14278919
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| || |||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  14278814 ttcaacaacactcaacacccattttttcaattcccaacactccacatcattttctctctcttattcaacattcattcaacttttaccctctccaatggtt 14278913  T
Q  376 tttcat 381  Q
    ||||||    
T  14278914 tttcat 14278919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 8176389 - 8176284
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||    
T  8176389 ttcaacatcattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtt 8176290  T
Q  376 tttcat 381  Q
    ||||||    
T  8176289 tttcat 8176284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 10569922 - 10569791
Alignment:
Q  249 ttttagaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatatt 347  Q
    |||||||||| | |||||| ||||| |||| |||||| ||||||| ||| |||||||||||| |||||||||||| ||||| | | |||||||||| | |    
T  10569922 ttttagaccacc-ccaatggttttttctttaaacacctttcaaca-ccactttttcaattcccaacactccacatcattttttgtctcttattcaacact 10569825  T
Q  348 cattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||||||||||||||||||||||    
T  10569824 cattcaacttttactctctccaatggtttttcat 10569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 15972525 - 15972657
Alignment:
Q  250 tttagaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattc 348  Q
    |||| ||||||| ||||| ||||| ||||| ||| |||| |||||||| |||||||||| |||||| || |||||||||||||| |||||||||| ||||    
T  15972525 tttataccatctacaatggttttttctttccacatcatttaacatccactttttcaatttccaacaatcgacattattttctctctcttattcaacattc 15972624  T
Q  349 attcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||| |||| ||||  ||||||||    
T  15972625 attcaacttttaccctcttcaataatttttcat 15972657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 25652769 - 25652903
Alignment:
Q  251 ttagaccatctccaatgatttttgctttcaacaccattcaa---catccattttttcaattcc-aacactccacattattttctctttcttattcaatat 346  Q
    ||||||||||| ||||| ||||| ||||||||| |||||||   |||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| |     
T  25652769 ttagaccatctacaatggttttttctttcaacatcattcaattacatccactttttcaattcccaacacttcacatcattttctctctcttattcaacac 25652868  T
Q  347 tcattcaacttttactctctccaatggtttttcat 381  Q
    ||||| || |||||| |||||||||||||||||||    
T  25652869 tcattgaatttttaccctctccaatggtttttcat 25652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 8681366 - 8681271
Alignment:
Q  285 cattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttc 379  Q
    ||||| ||||| | |||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  8681366 cattcgacatcaactttttcaatttccaacactccatatcattttctctttcttattcaacattcattcaacttttaccctctccaatggtttttc 8681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 41153092 - 41152987
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| | |||||||||||||||  ||| ||||| ||    
T  41153092 ttcaacaatattcaacatccattttttcaattctcaacactccacatcattttctctctcttattcaacactcattcaacttttaccttcttcaatgatt 41152993  T
Q  376 tttcat 381  Q
    ||||||    
T  41152992 tttcat 41152987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 4577012 - 4577095
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  4577012 tttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcat 4577095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 27407819 - 27407725
Alignment:
Q  290 aacatccattttttcaatt-ccaacactccacattatttt--ctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||| |||||||||| |||| ||||||||| |||||  |||| |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  27407819 aacatccactttttcaatttccaatactccacatcattttatctctctcttattcaacactcattcaacttttaccctctccaatggtttttcat 27407725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 25032338 - 25032443
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||| ||| ||||||| |||  ||||||||| |||||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||  ||||| |    
T  25032338 ttcaataccgttcaacacccaccttttcaatttccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctttaatgggt 25032437  T
Q  376 tttcat 381  Q
    ||||||    
T  25032438 tttcat 25032443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 11954796 - 11954867
Alignment:
Q  310 caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||  |||  ||||||||||||||    
T  11954796 caacactccacatcattttctctctcttattcaacattcattcaacttttatcctcgtcaatggtttttcat 11954867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 31013922 - 31013828
Alignment:
Q  285 cattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  31013922 cattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 31013828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 42608130 - 42608025
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| |||||||||||| |||||||||||   |||||||||| | ||||||||| | |||||||| | | ||||||||||||| || |||||| |||    
T  42608130 ttcaacaacattcaacatccgttttttcaattattaacactccacgtcattttctctcttttattcaacacttattcaacttttaccctttccaatagtt 42608031  T
Q  376 tttcat 381  Q
    ||||||    
T  42608030 tttcat 42608025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 34918540 - 34918459
Alignment:
Q  299 tttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||| |||||||||||||| |||||||  ||||||||||| | ||||||||||||||| ||||||| || ||||||||    
T  34918540 tttttcaatttccaacactccacatcattttct--ttcttattcaacactcattcaacttttaccctctccattgatttttcat 34918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 3454720 - 3454811
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttc-ttattcaatattcattcaacttttactctc 365  Q
    |||||| ||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| || | |||||| | |||||||| ||||||||||    
T  3454720 tttcaatacccttcaacatccactttttcaattctcaacactccacatcattttctctctcataattcaacactcattcaatttttactctc 3454811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 19241301 - 19241403
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| ||||||||||| ||||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  19241301 ttcaacaaccttcaacacccactttttcaattctcaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 19241399  T
Q  375 tttt 378  Q
    ||||    
T  19241400 tttt 19241403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 37882515 - 37882412
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| | ||||||| |||||||||||||| |||||||||||||| ||||| ||  ||||||||||   |||||||||||||||  | |||||| |||    
T  37882515 ttcaacaacgttcaacacccattttttcaattcccaacactccacatcattttttc--tcttattcaacgctcattcaacttttaccatttccaatagtt 37882418  T
Q  376 tttcat 381  Q
    ||||||    
T  37882417 tttcat 37882412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 32976652 - 32976560
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  32976652 ttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 32976560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 34529468 - 34529363
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| ||||||||| | | ||||| ||||| ||||||  ||||| ||||||||| | ||||| || ||||||| ||||||||  |||||||||||||    
T  34529468 ttcaacaacattcaacacctacttttttaattctcaacacatcacatcattttctctcttttatttaacattcatttaacttttatcctctccaatggtt 34529369  T
Q  376 tttcat 381  Q
    ||||||    
T  34529368 tttcat 34529363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 4938170 - 4938273
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggt 374  Q
    |||||||  ||||||||  |||||||||||||| ||| |||| |||| ||||||||| ||||| ||||| | | ||||||||||||| |||||||||| |    
T  4938170 ttcaacaatattcaacactcattttttcaattctcaatactcaacatcattttctctctcttaattcaacactaattcaacttttaccctctccaatgat 4938269  T
Q  375 tttt 378  Q
    ||||    
T  4938270 tttt 4938273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 27942476 - 27942578
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| ||||||||| || |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  27942476 ttcaacaaccttcaacacccactttttcaatccccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 27942574  T
Q  375 tttt 378  Q
    ||||    
T  27942575 tttt 27942578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 12912854 - 12912957
Alignment:
Q  270 ttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctcc 368  Q
    |||| ||||||||||||||||||      ||||| |||||| |||||||||||| ||||| ||| ||||||| || | ||||||||||||||| |||||     
T  12912854 tttttctttcaacaccattcaac------ttttttaattcctaacactccacatcattttatctctcttatttaacactcattcaacttttaccctctct 12912947  T
Q  369 aatggttttt 378  Q
    |||| |||||    
T  12912948 aatgattttt 12912957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 27407107 - 27407026
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attc-aatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||||||||||||| |||| |||| || | ||||||||||||||| |||||||||| |||||    
T  27407107 tttttcaattcccaacactccacattattttctctctcttaattctaacactcattcaacttttac-ctctccaatgattttt 27407026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 40888889 - 40888981
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||| ||||||    
T  40888889 ttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatagttttt 40888981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 29619101 - 29618998
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||| |||||||||||||| ||||||| | || | |||||| |  ||||||| |||||| |||||||||||    
T  29619101 tttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctttctcataattcaacacccattcaatttttac-ctctccaatgg 29619003  T
Q  374 ttttt 378  Q
    |||||    
T  29619002 ttttt 29618998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 39008464 - 39008567
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| ||||||||||| ||  |||||||| || | |||||| || ||||||| ||||||  ||||||||||    
T  39008464 tttcaatacccttcaacatccactttttcaattcccaacactccaaatcgttttctctctcataattcaacatccattcaatttttac-atctccaatgg 39008562  T
Q  374 ttttt 378  Q
    |||||    
T  39008563 ttttt 39008567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 42317873 - 42317978
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | |||||||| || |||||||||| ||||||||||| || ||||||||| |||| |||||| |  | ||||| |||||| ||||||||| ||    
T  42317873 ttcaacaaccttcaacattcactttttcaatttccaacactccatatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatagt 42317971  T
Q  375 ttttcat 381  Q
    |||||||    
T  42317972 ttttcat 42317978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 9274525 - 9274457
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaac 355  Q
    ||||||||||| |||||||||| |||||||||||||| ||||| ||| ||||||| || | |||||||||    
T  9274525 ttcaacatccactttttcaattcccaacactccacatcatttt-tctctcttatttaacactcattcaac 9274457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 23649232 - 23649152
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| ||||||||| || |||||||||||||| |||||| ||| ||| || |||||| |||| |||||||||||    
T  23649232 tttttcaattcccaacactccatatcattttctctttcttaattcaacatttatttaatttttac-ctcttcaatggttttt 23649152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 23809339 - 23809419
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| ||||||||| || |||||||||||||| |||||| ||| ||| || |||||| |||| |||||||||||    
T  23809339 tttttcaattcccaacactccatatcattttctctttcttaattcaacatttatttaatttttac-ctcttcaatggttttt 23809419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 25670982 - 25670894
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| || | |||||| | |||||||| |||||  ||||||||||||    
T  25670982 ttcaacacccactttttcaattcccaacactccacatcattttctctctcataattcaacactcattcaattttta-actctccaatggt 25670894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 23089502 - 23089605
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| ||||| |||||| |||||| ||||| ||||||||| || || ||||| |  ||||||| |||||| |||||||||||    
T  23089502 tttcaatacccttcaacacccacttttttaattcccaacacttcacatcattttctctctcataattcaacacccattcaatttttac-ctctccaatgg 23089600  T
Q  374 ttttt 378  Q
    |||||    
T  23089601 ttttt 23089605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 30648188 - 30648097
Alignment:
Q  288 tcaacatccattttttcaattcca-acactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| ||||||||||||  ||||||||||  ||||| ||| ||||| ||||| | |||||||| |||||| ||||||||||||||||    
T  30648188 tcaacacccactttttcaattccctacactccacaccattttatctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 30648097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 42807075 - 42806984
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||||| |||| |||||| |  ||||||| ||||||  |||| ||||||||||    
T  42807075 tcaacacccactttttcaattctcaacactccacatcattttctctctcttaattcaacacccattcaatttttac-atctctaatggttttt 42806984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 41477142 - 41477273
Alignment:
Q  251 ttagaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattca 349  Q
    |||||| ||||  |||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||| |||||||||| | |||    
T  41477142 ttagactatctaaaatggttttttctttcaacaccattcaacatccactttttcaattcccaacactccacgtcattttctctctcttattcaacactca 41477241  T
Q  350 ttcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||  ||||||||||||||||||    
T  41477242 ttcaacttttaccatctccaatggtttttcat 41477273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 34955776 - 34955647
Alignment:
Q  253 agaccatctccaatgatttttg-ctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcat 350  Q
    |||||||| |||||| |||||  ||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||    
T  34955776 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacactcat 34955678  T
Q  351 tcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||||||||||||    
T  34955677 tcaacttttaccctctccaatggtttttcat 34955647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 30470904 - 30470799
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||| |||||||||| | |||||||||||||||||||| ||||||||    
T  30470904 ttcaacaccattcaagatccattttttcaattcccaacactccacgtcattttctctctcttattcaacactcattcaacttttactctcttcaatggtt 30470805  T
Q  376 tttcat 381  Q
    ||||||    
T  30470804 tttcat 30470799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 18029585 - 18029480
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||| ||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||    
T  18029585 ttcaacaccattcgacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtt 18029486  T
Q  376 tttcat 381  Q
    ||||||    
T  18029485 tttcat 18029480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 26632239 - 26632134
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||| ||| |||||||||||| ||||| |||| | ||||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  26632239 ttcaacaccattcaacacccactttttcaattcccaacacgccacgtcattttctctctcttattcaacactcattcaacttttactctctccaatggtt 26632140  T
Q  376 tttcat 381  Q
    ||||||    
T  26632139 tttcat 26632134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 36912402 - 36912507
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||| ||| |||||||||||| ||||||| |||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||    
T  36912402 ttcaacaccattcaacacccactttttcaattcccaacactctacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtt 36912501  T
Q  376 tttcat 381  Q
    ||||||    
T  36912502 tttcat 36912507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 17741702 - 17741802
Alignment:
Q  282 caccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttca 380  Q
    |||||||||||||||| |||||||||||| || ||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||    
T  17741702 caccattcaacatccactttttcaattcccaagactccacatcattttctctctcttattcaatactcattcaacttttaccctctccaatgatttttca 17741801  T
Q  381 t 381  Q
    |    
T  17741802 t 17741802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 8610067 - 8609962
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||||||||||||| || |||||||||||| ||||||||| || ||||||||| | |||||||| | ||||||||||||||| |||||||||||||    
T  8610067 ttcaacaccattcaacattcactttttcaattcccaacactccatatcattttctctcttttattcaacactcattcaacttttaccctctccaatggtt 8609968  T
Q  376 tttcat 381  Q
    ||||||    
T  8609967 tttcat 8609962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 381
Target Start/End: Complemental strand, 30289846 - 30289711
Alignment:
Q  251 ttagaccatctccaatgatttttg--ctttcaacaccattcaacatcca--ttttttcaattc-caacactccacattattttctctttcttattcaata 345  Q
    |||||||| |||||||| |||||   ||||||||||||||||| |||||  |||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  30289846 ttagaccacctccaatgtttttttttctttcaacaccattcaatatccactttttttcaattctcaacactctacatcattttctctctcttattcaata 30289747  T
Q  346 ttcattcaacttttactctctccaatggtttttcat 381  Q
      |||||||||||||| ||||||||| |||||||||    
T  30289746 cacattcaacttttaccctctccaattgtttttcat 30289711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 4625580 - 4625475
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||||||||||||  || |||||||||||| ||||||||| |||||||||||| |||||||||| | ||||||||||||||   ||||||||||||    
T  4625580 ttcaacaccattcaacactcactttttcaattcccaacactccaaattattttctctctcttattcaacactcattcaacttttatcatctccaatggtt 4625481  T
Q  376 tttcat 381  Q
    ||||||    
T  4625480 tttcat 4625475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 29637241 - 29637136
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| || | ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || | ||||||||||||||| |||| |||| |||    
T  29637241 ttcaacaacacttaacatccattttttcaatttccaacactccacataattttctctttcttatttaacactcattcaacttttaccctcttcaatagtt 29637142  T
Q  376 tttcat 381  Q
    ||||||    
T  29637141 tttcat 29637136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 42860706 - 42860804
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||| ||||  |||||||||||||||||||    
T  42860706 accattcaaca-ccactttttcaattcccaacactccacatcattttctctttcttattcaacactcattcaacatttaacctctccaatggtttttcat 42860804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 38584980 - 38584875
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||||||||||||  || |||||||||||| |||||||||| | ||||||||| |||||||||| | || |||||||||||| | |||||||||||    
T  38584980 ttcaacaccattcaacacacactttttcaattcccaacactccacgtcattttctctctcttattcaacactcgttcaacttttacccactccaatggtt 38584881  T
Q  376 tttcat 381  Q
    ||||||    
T  38584880 tttcat 38584875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 39811168 - 39811039
Alignment:
Q  254 gaccatctccaatgatttttgctttcaacaccattcaacatcca-ttttttcaattccaa-cactccacattattttctctttcttattcaatattcatt 351  Q
    |||||| | ||||| ||||| | ||||||||||||||||| ||| |||||| |||||| | |||||||||| ||||| ||| |||||||||| | |||||    
T  39811168 gaccatgtacaatggttttttcattcaacaccattcaacacccactttttttaattcctagcactccacatcattttatctctcttattcaacactcatt 39811069  T
Q  352 caacttttactctctccaatggtttttcat 381  Q
    |||||||||| ||||||||| |||||||||    
T  39811068 caacttttaccctctccaatagtttttcat 39811039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 5212283 - 5212381
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| ||||| |||| |||||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||| ||||||||    
T  5212283 accattcaaca-ccacttttttaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatgatttttcat 5212381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 26749488 - 26749389
Alignment:
Q  283 accattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||||||||| ||||| |||||||||| || ||||||||  | |||||||| ||||||||||||||||| |||| ||||||||||||||    
T  26749488 accattcaacacccatttttttaattctcaacactccatatcattttctcccttttattcaacattcattcaacttttaccctcttcaatggtttttcat 26749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 13814954 - 13815037
Alignment:
Q  299 tttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||| | | ||||||| ||||| |||||||||||||||||||    
T  13814954 tttttcaatttccaacactccacatcattttctctctcttattcaacactaattcaacatttaccctctccaatggtttttcat 13815037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 381
Target Start/End: Complemental strand, 24431962 - 24431847
Alignment:
Q  264 aatgatttttgctttcaacaccattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattcattcaacttttact 362  Q
    |||||||||| | ||||||| ||||||||||||| |||||||| || |||||||||| || | ||||||  |||||||||||| | |||||||||||||     
T  24431962 aatgattttttcattcaacatcattcaacatccactttttcaattttcaacactccaaatcactttctc--tcttattcaatact-attcaacttttacc 24431866  T
Q  363 ctctccaatggtttttcat 381  Q
    |||||||||| ||||||||    
T  24431865 ctctccaatgatttttcat 24431847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 7990416 - 7990521
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| ||||||||| ||| | ||| ||||  ||||||||||| ||||||| | | |||||||||| | ||||||||||||||| |||||||||||||    
T  7990416 ttcaacaacattcaacacccactattttaattttcaacactccacgttattttttttctcttattcaacactcattcaacttttaccctctccaatggtt 7990515  T
Q  376 tttcat 381  Q
    ||||||    
T  7990516 tttcat 7990521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 5735279 - 5735377
Alignment:
Q  283 accattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| ||||||||||  ||| |||| |||| ||||||||| |||||||||| | |||||||| |||||| |||||||||||||||||||    
T  5735279 accattcaaca-ccactttttcaattttcaatactcgacatcattttctctctcttattcaacactcattcaatttttaccctctccaatggtttttcat 5735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 43618429 - 43618333
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| ||| |||||||| |||||||||||| ||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||    
T  43618429 accattcaacacccactttatcaattcccaacactccacatcattttctctctcttaattcaacatccattcaatttttac-ctctccaatggttttt 43618333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 43524478 - 43524375
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| |||||||||||||| ||||||||| || | |||||| | |||||||| |||||| ||||||||||     
T  43524478 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatga 43524380  T
Q  374 ttttt 378  Q
    |||||    
T  43524379 ttttt 43524375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 35931847 - 35931952
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||||||| |||||||||| |||||||||||||| ||||||||| |||| |||||| |  | ||||| |||||| ||||||||| ||    
T  35931847 ttcaacaaccttcaacatccactttttcaatttccaacactccacatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatagt 35931945  T
Q  375 ttttcat 381  Q
    |||||||    
T  35931946 ttttcat 35931952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 1958256 - 1958164
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  1958256 ttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 1958164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 12272557 - 12272466
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| ||||||||||  ||||||||||| | ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  12272557 tcaacatccactttttcaattttcaacactccacttcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 12272466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 40283459 - 40283562
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| |||||||||||||| ||||||||| || | |||||| |  ||||||| |||||| ||||||||| |    
T  40283459 tttcaatacctttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacacccattcaatttttac-ctctccaatag 40283557  T
Q  374 ttttt 378  Q
    |||||    
T  40283558 ttttt 40283562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 43525164 - 43525073
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctct-ttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||| |||||||||||||| ||||||||| || | |||||| | |||||||| |||||| ||||||||||||||||    
T  43525164 tcaacacccactttttcaatttccaacactccacatcattttctctcttttaattcaacactcattcaatttttac-ctctccaatggttttt 43525073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 45101100 - 45101009
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  45101100 tcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 45101009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 35099428 - 35099522
Alignment:
Q  285 cattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| |||| |||||| | |||||||| |||||| |||||||||| |||||    
T  35099428 cattcaacacccactttttcaattcccaacactctacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatgattttt 35099522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 42859932 - 42860012
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| ||||||  |||||||||||||||    
T  42859932 tttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-atctccaatggttttt 42860012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 44149877 - 44149957
Alignment:
Q  298 ttttttcaattccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| | |||||||| ||||||| |||||||||||| | ||||||||  ||||||| |||||| ||||||||||||||||    
T  44149877 ttttttaatttccaacattccacatcattttctctttcataattcaatacccattcaatttttac-ctctccaatggttttt 44149957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 26244481 - 26244584
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| |||||||| || |||||||||||| |||||||||||| ||||||||| || | |||||| |  ||||||| |||||| ||||||||| |    
T  26244481 tttcaatacccttcaacattcactttttcaattcccaacactccacatcattttctctctcataattcaacacacattcaatttttac-ctctccaatag 26244579  T
Q  374 ttttt 378  Q
    |||||    
T  26244580 ttttt 26244584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 23353268 - 23353189
Alignment:
Q  278 tcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaact 356  Q
    |||||| || ||||| |||| |||||||||| ||||||||||||||   ||||||| ||||||| || ||||||||||||    
T  23353268 tcaacaacactcaacgtccactttttcaatttccaacactccacatccctttctctctcttatttaacattcattcaact 23353189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 23549718 - 23549800
Alignment:
Q  297 attttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||||| |||||||||| || | |||||| |  ||||||| |||||| ||||||||||||||||    
T  23549718 attttttcaattcccaacactccacactattttctctctcataattcaacacccattcaatttttac-ctctccaatggttttt 23549800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 31129567 - 31129486
Alignment:
Q  299 tttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||||||||||||| ||||||||| |||| |||| | | |||||||||||||||  |||| |||| |||||    
T  31129567 tttttcaattctcaacactccacatcattttctctctcttaattcgacactcattcaacttttaccatctctaatgattttt 31129486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 13947350 - 13947453
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| | | |||||||||||| |||||||||||| ||||||| | || | |||||| |  ||||||| |||||| |||||||||||    
T  13947350 tttcaatacccttcaacacctactttttcaattcccaacactccacatcattttctttctcataattcaacacccattcaatttttac-ctctccaatgg 13947448  T
Q  374 ttttt 378  Q
    |||||    
T  13947449 ttttt 13947453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 30624 - 30519
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||| |||||||||| | | |||||||||||||||||||||||||||    
T  30624 ttcaacaccattcaacatccactttttcaattctcaacactccatataattttctctctcttattcaacacttattcaacttttactctctccaatggtt 30525  T
Q  376 tttcat 381  Q
    ||||||    
T  30524 tttcat 30519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 24793453 - 24793582
Alignment:
Q  253 agaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcatt 351  Q
    ||||||| | ||||| ||||| ||||||||||||||||||| ||  |||||||| ||| ||||||||| || |||||||||||||||||||| | |||||    
T  24793453 agaccatgttcaatggtttttcctttcaacaccattcaacaccccctttttcaagtcccaacactccaaatcattttctctttcttattcaacactcatt 24793552  T
Q  352 caacttttactctctccaatggtttttcat 381  Q
    |||||||||| |||||||||||||||||||    
T  24793553 caacttttacactctccaatggtttttcat 24793582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 30630893 - 30630795
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30630893 accattcaaca-ccacttttttaattcccaacactccacattattttctctctcttattcaatactcattcaacttttactctctccaatggtttttcat 30630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 22737681 - 22737576
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||||||  ||||||||||||    
T  22737681 ttcaacagcattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacattcattcaacttttaccttctccaatggtt 22737582  T
Q  376 tttcat 381  Q
    ||||||    
T  22737581 tttcat 22737576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 22191207 - 22191307
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||||    
T  22191207 ttcaacaccattcaaca-ccactttttcaatttccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtt 22191305  T
Q  376 tt 377  Q
    ||    
T  22191306 tt 22191307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 25218891 - 25218789
Alignment:
Q  280 aacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||| |||||||| |||||||||| |||||||| || || ||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||    
T  25218891 aacaccatttaacatccactttttcaatttccaacacttcatatcattttctctctcttattcaatactcatttaacttttaccctctccaatggttttt 25218792  T
Q  379 cat 381  Q
    |||    
T  25218791 cat 25218789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 21654839 - 21654937
Alignment:
Q  283 accattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||| |||||||||||||||| ||||||||| |||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  21654839 accattcaaca-ccactttttcaatttccaacactccacatcattttctctctcttattcaacactcattcaacatttaccctctccaatggtttttcat 21654937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 35193219 - 35193100
Alignment:
Q  263 caatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    ||||| ||||| |||||||||  ||||||||  || |||||||||||| |||||||||||| ||||||| | | |||||||| | |||||||||||||||    
T  35193219 caatggttttttctttcaacattattcaacactcactttttcaattcccaacactccacataattttctttctattattcaacactcattcaacttttac 35193120  T
Q  362 tctctccaatggtttttcat 381  Q
      ||||||||||||||||||    
T  35193119 catctccaatggtttttcat 35193100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 43571147 - 43571078
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| |||||||||||||||    
T  43571147 ccaacactccacatcattttctctctcttattcaacactcattcaacttttactatctccaatggttttt 43571078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 48984900 - 48984998
Alignment:
Q  283 accattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||| ||||||| |||||||| ||||||||| |||||||||| | ||||||||| |||||  ||||||||||||||||||    
T  48984900 accattcaaca-ccactttttcaatttccaacgctccacatcattttctctctcttattcaacactcattcaacatttaccatctccaatggtttttcat 48984998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 26013253 - 26013180
Alignment:
Q  307 ttccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  26013253 ttccaacactccatatcattttctctctctt-ttcaatactcattcaacttttactctctccaatgatttttcat 26013180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 38970016 - 38970124
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctt--tcttattcaatattcattcaacttttactctctccaatg 372  Q
    |||||||||| ||||||| ||| |||||||||| |||||||||||||| ||||| | ||  |||||||||| | |||||||||||||||  |||||||||    
T  38970016 tttcaacacctttcaacacccactttttcaatttccaacactccacatcatttttttttcctcttattcaacactcattcaacttttaccgtctccaatg 38970115  T
Q  373 gtttttcat 381  Q
     ||||||||    
T  38970116 atttttcat 38970124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 26812098 - 26812201
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| |||||| | |||||||| |||||||| |||||| |||||||||||    
T  26812098 tttcaatacccttcaacacccattttttcaattcccaacactccatatcattttatctttcataattcaatactcattcaaattttac-ctctccaatgg 26812196  T
Q  374 ttttt 378  Q
    |||||    
T  26812197 ttttt 26812201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 33078860 - 33078769
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||| |||||| ||||||||| ||||||    
T  33078860 tcaacatccactttttcaattcccaacactccacgttattttctctctcttaattcaacattcattcaatttttac-ctctccaatagttttt 33078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 114486 - 114581
Alignment:
Q  287 ttcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||| ||| ||||| ||||| ||||||||||||| ||||||||| |||||||||| | ||||| ||||||||   ||||||||||||||||||    
T  114486 ttcaacacccactttttaaattctcaacactccacatcattttctctctcttattcaacactcatttaacttttatcatctccaatggtttttcat 114581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 36518511 - 36518603
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  36518511 ttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 36518603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 40302559 - 40302475
Alignment:
Q  295 ccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  40302559 ccattttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 40302475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 43202240 - 43202120
Alignment:
Q  263 caatgatttttgctttcaacaccattcaacatccattttttcaattccaa--cactccacattattttctctttcttattcaatattcatt---caactt 357  Q
    ||||| ||||| | |||||||  |||||||||||| ||||||||| || |  |||| ||||||||||||||| ||||| |||| | |||||   ||||||    
T  43202240 caatggtttttccattcaacaaaattcaacatccactttttcaatgcccaatcacttcacattattttctctctcttactcaacactcattattcaactt 43202141  T
Q  358 ttactctctccaatggttttt 378  Q
    |||| ||||||||||||||||    
T  43202140 ttaccctctccaatggttttt 43202120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 47159580 - 47159479
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| | ||||||||||| ||||| | | |||||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||||||    
T  47159580 ttcaacaaccttcaacatccactttttaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggtt 47159482  T
Q  376 ttt 378  Q
    |||    
T  47159481 ttt 47159479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 5813090 - 5813186
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||| |||||||| ||||| ||||||||| |||| |||||| | | |||||| |||||| ||||||||||||||||    
T  5813090 accattcaacacccactttttcaattcccaacactgcacatcattttctctctcttaattcaacacttattcaatttttac-ctctccaatggttttt 5813186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 35029189 - 35029093
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| | | |||||||||||| |||| ||||||| ||||||||| ||||| ||||| | |||||||| |||||| ||||||||||||||||    
T  35029189 accattcaacacctactttttcaattcccaacattccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 35029093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 25038642 - 25038574
Alignment:
Q  313 cactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||| ||||| ||||||||| |||||||| | | |||||||| |||||| |||||||||||||||||||    
T  25038642 cacttcacatcattttctctctcttattcgacactcattcaagttttaccctctccaatggtttttcat 25038574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 30566597 - 30566688
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||||| |||| |||||| | |||||||| ||||| |||||||||| ||||||    
T  30566597 tcaacacccactttttcaattctcaacactccacatcattttctctctcttaattcaacactcattcaattttta-tctctccaatagttttt 30566688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 42881355 - 42881446
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |   |||||| |||||| ||||||||||||||||    
T  42881355 tcaacatccactttttcaattcccaacactccacatcattttctctctcttaattcaacaccaattcaatttttac-ctctccaatggttttt 42881446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 32748793 - 32748839
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctct 332  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||    
T  32748793 ttcaacatctattttttcaattcccaacactccacattattttctct 32748839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 37887843 - 37887935
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||| |||| |||||| || |||| || |||||| |||| |||| ||||||    
T  37887843 ttcaacatccattttttcaattcccaacactccacatcattttatctctcttaattcaacatccatttaatttttac-ctcttcaatagttttt 37887935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 39769725 - 39769817
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||| || | |||||| | |||||||| |||||| ||||| ||||||||||    
T  39769725 ttcaacacccactttttcaatttccaacactccacatcattttctctctcataattcaacactcattcaatttttac-ctctctaatggttttt 39769817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 32130358 - 32130255
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||||| ||||| ||| ||||| |||||| |||||||||||| ||||||||| || | ||| ||||  ||||||| |||||| |||||||||||    
T  32130358 tttcaataccatgcaacacccacttttttaattcccaacactccacatcattttctctctcataatttaatacccattcaatttttac-ctctccaatgg 32130260  T
Q  374 ttttt 378  Q
    |||||    
T  32130259 ttttt 32130255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 38351587 - 38351660
Alignment:
Q  298 ttttttcaattccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaat 371  Q
    |||||| | |||||||||||||||| |||||||||||| | |||||| ||||||| || |||||| |||||||||    
T  38351587 ttttttaatttccaacactccacatcattttctctttcataattcaacattcatttaatttttac-ctctccaat 38351660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 30720128 - 30720208
Alignment:
Q  299 tttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||| |||||||||||    
T  30720128 tttttcaatttccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctcttcaatggttttt 30720208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 37888538 - 37888571
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc 310  Q
    ||||||||||||||||||||| ||||||||||||    
T  37888538 ttcaacaccattcaacatccactttttcaattcc 37888571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 20354208 - 20354311
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| | | |||||||||||| |||||||||||| ||||| ||| || || ||||| |  ||||||| |||||| |||||||||||    
T  20354208 tttcaatacccttcaacacctactttttcaattcctaacactccacatcattttttctatcataattcaacacccattcaatttttac-ctctccaatgg 20354306  T
Q  374 ttttt 378  Q
    |||||    
T  20354307 ttttt 20354311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 45549706 - 45549603
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||| |||||||||||||| ||||| ||| || | |||||| |  ||||||| |||||| ||||||||| |    
T  45549706 tttcaatacccttcaacaaccactttttcaattcccaacactccacatcattttttctctcataattcaacacccattcaatttttac-ctctccaatag 45549608  T
Q  374 ttttt 378  Q
    |||||    
T  45549607 ttttt 45549603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 19409097 - 19409222
Alignment:
Q  257 catctccaatgatttttgctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaac 355  Q
    ||||||||||| ||||| ||||| ||| ||||||||| ||| |||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||    
T  19409097 catctccaatggtttttcctttcgacatcattcaacacccactttttcaatttccaaaactcaacattattttctctctcttattcaatattcattcaac 19409196  T
Q  356 ttttactctctccaatggtttttcat 381  Q
    |||||   ||||||||||||||||||    
T  19409197 ttttatcatctccaatggtttttcat 19409222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 47750310 - 47750206
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttt 376  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||| |||||||||| | ||||||||||||||| |||||||||| |||    
T  47750310 ttcaacaccattcaacatccactttttcaattcccacactccacgtcattttctctctcttattcaacactcattcaacttttaccctctccaatgattt 47750211  T
Q  377 ttcat 381  Q
    |||||    
T  47750210 ttcat 47750206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 39049159 - 39049064
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  39049159 ttcaacatccacttttttaatttccaacactccacatcattttctctttcttattcaacattcattcaacttttaccctctccgatggtttttcat 39049064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 31848853 - 31848755
Alignment:
Q  283 accattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  31848853 accattcaaca-ccattttttcaatttccaacactccacatcattttctctctcttattcaacactcattcaacatttaccctctccaatggtttttcat 31848755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 54356972 - 54356877
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||| | |||||||||| |  |||||||||||||||||||| |||||||||||||    
T  54356972 ttcaacatccactttttcaattcccaacactccacatcattttctttctcttattcaacacacattcaacttttactctctctaatggtttttcat 54356877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 40596844 - 40596743
Alignment:
Q  281 acaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttc 379  Q
    ||||||||||| || |||||||||||||  ||||||||||| | ||||||||| | |||||||| | | |||||||||||||||||||||||||||||||    
T  40596844 acaccattcaagattcattttttcaattttcaacactccacgtcattttctctcttttattcaacacttattcaacttttactctctccaatggtttttc 40596745  T
Q  380 at 381  Q
    ||    
T  40596744 at 40596743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 378
Target Start/End: Original strand, 34564096 - 34564212
Alignment:
Q  263 caatgatttttgctttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttac 361  Q
    ||||| ||||| | |||||||  |||||||||||||||||| ||||| |||||||  | |||||||||||| |||||||||| ||||||| |||||||||    
T  34564096 caatgcttttttcattcaacattattcaacatccatttttttaattctcaacactttatattattttctctctcttattcaacattcatttaacttttac 34564195  T
Q  362 tctctccaatggttttt 378  Q
     |||| |||||||||||    
T  34564196 cctcttcaatggttttt 34564212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 53184175 - 53184077
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| |||||||||||| |||||| ||||| ||||||||| |||||||||| | |||||||||||| || |||||||||||||||||||    
T  53184175 accattcaaca-ccactttttcaattcccaacacttcacatcattttctctctcttattcaacactcattcaactttaaccctctccaatggtttttcat 53184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 36656555 - 36656649
Alignment:
Q  285 cattcaacatccattttttcaattccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||  ||||||||||||||  ||||||||||| ||||||||| ||||| |||||| ||||||||||||||| |||||| ||| ||||||||    
T  36656555 cattcaacactcattttttcaattc--acactccacatcattttctctctcttaatcaatactcattcaacttttacactctccgatgatttttcat 36656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 16020833 - 16020935
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||    
T  16020833 ttcaacaaccttcaacacccactttttcaattcccaacactccacattattttctctctcttaattcaacatccattcaatttttac-ctctccaatggt 16020931  T
Q  375 tttt 378  Q
    ||||    
T  16020932 tttt 16020935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 2215362 - 2215266
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  2215362 accattcaacacccactttttcaattcccaacactccacataattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 2215266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 33526711 - 33526808
Alignment:
Q  285 cattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||| ||||||||||| |||||||||  || ||||||| | | |||||||||| ||||||||||||||| |||||||||  ||||||||    
T  33526711 cattcaacatccactttttcaattctcaacactccgtatcattttctttcttttattcaatactcattcaacttttaccctctccaataatttttcat 33526808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 10089840 - 10089938
Alignment:
Q  283 accattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||| ||| ||||||||||  ||| ||||||||| ||||| ||| |||||||||| | ||||||||||||||| |||||||||| ||||||||    
T  10089840 accattcaacacccactttttcaattttcaatactccacatcatttt-tctctcttattcaacactcattcaacttttaccctctccaatgatttttcat 10089938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 39533356 - 39533262
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||| ||| |||||||||| |||| | ||||| | |||||||||||||||||||| |||||||||||||||||  ||| ||||| ||||||||    
T  39533356 tcaacacccactttttcaatttccaatattccacgtcattttctctttcttattcaacattcattcaacttttaccatctacaatgatttttcat 39533262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 46917591 - 46917495
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  46917591 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 46917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 55408618 - 55408553
Alignment:
Q  313 cactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| ||||||||| |||||||||| | |||||||||||||||| |||||||| ||||||    
T  55408618 cactccacatcattttctctctcttattcaacactcattcaacttttactatctccaatagttttt 55408553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 33604654 - 33604745
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  33604654 tcaacacccactttttcaattcccaacactccacatcattttctctatcttaattcaacactcattcaatttttac-ctctccaatggttttt 33604745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 45081499 - 45081396
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||||| |||||||||||| ||||||||| || | |||||| | |||||||| |||||| |||||||||||    
T  45081499 tttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 45081401  T
Q  374 ttttt 378  Q
    |||||    
T  45081400 ttttt 45081396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 3533393 - 3533291
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  3533393 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 3533295  T
Q  375 tttt 378  Q
    ||||    
T  3533294 tttt 3533291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 6290586 - 6290688
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  6290586 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 6290684  T
Q  375 tttt 378  Q
    ||||    
T  6290685 tttt 6290688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 12158134 - 12158229
Alignment:
Q  287 ttcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||  ||||| ||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||   | | ||||||||||||||    
T  12158134 ttcaacatccacattttcgattcccaacactccacatcattttctctctcttattcaacactcattcaacttttatctttttcaatggtttttcat 12158229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 34199355 - 34199253
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||||||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||| |    
T  34199355 ttcaacaaccttcaacatccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatgat 34199257  T
Q  375 tttt 378  Q
    ||||    
T  34199256 tttt 34199253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 39113819 - 39113736
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| ||||||||| | |||||||| | |||||||||||||||  | | ||||||||||||||    
T  39113819 tttttcaattcccaacactccacatcattttctctcttttattcaacactcattcaacttttaccattttcaatggtttttcat 39113736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 40721021 - 40721123
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    |||||||  |||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  40721021 ttcaacaatattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 40721119  T
Q  375 tttt 378  Q
    ||||    
T  40721120 tttt 40721123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 51392217 - 51392320
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||  ||||||||  || ||||| ||||| ||||||||||||| ||||| |||  ||||||||| |||| |||||||||||| |||| ||||||||    
T  51392217 ttcaacattattcaacacacacttttttaattctcaacactccacatcattttttct--cttattcaacattcgttcaacttttaccctcttcaatggtt 51392314  T
Q  376 tttcat 381  Q
    ||||||    
T  51392315 tttcat 51392320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 56025 - 55897
Alignment:
Q  253 agaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcatt 351  Q
    ||||||| | ||||| ||||| | |||||||||||| ||||  || |||||||||| |||||||||| ||| ||||||| | ||||||||||  ||||||    
T  56025 agaccatgtacaatggttttttcattcaacaccattgaacactcactttttcaatttccaacactccgcatcattttctttctcttattcaactttcatt 55926  T
Q  352 caacttttactctctccaatggtttttcat 381  Q
     ||||||||   ||| ||||||||||||||    
T  55925 -aacttttatcatcttcaatggtttttcat 55897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 23389993 - 23389913
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||||||||||||| || | |||||||| |||||||| | |||| ||||||||||||||||    
T  23389993 tttttcaattcccaacactccacattattttctctctcataattcaatactcattcaattgttac-ctctccaatggttttt 23389913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 13094477 - 13094374
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| |||||||||||||| |||||||||||||| ||||||||| || | |||||| |  ||||||| ||||| |||||||||| |    
T  13094477 tttcaatacccttcaacacccattttttcaattcccaacactccacatcattttctctctcataattcaacacccattcaattttta-tctctccaatag 13094379  T
Q  374 ttttt 378  Q
    |||||    
T  13094378 ttttt 13094374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 17329999 - 17329943
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattccaacactccacattattttctct 332  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||||||    
T  17329999 tttcaatacccttcaacatccactttttcaattccaacattccacatcattttctct 17329943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 33523267 - 33523359
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||||| ||||||| ||||||||| |||| |||||| || ||||||| ||||  ||||||||||| |||||    
T  33523267 tcaacatccactttttcaattcccaacattccacatcattttctctctcttaattcaacatccattcaattttttatctctccaatgattttt 33523359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 38173552 - 38173643
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||| ||| |||||| ||||||||||||||||    
T  38173552 tcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcatccaatttttac-ctctccaatggttttt 38173643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 48403987 - 48403884
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| |||||||| || |||||||||| |||||||||||||| ||||||||| || | |||||| | |||||||| |||||| ||||||||||     
T  48403987 tttcaatacccttcaacattcactttttcaatttccaacactccacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatga 48403889  T
Q  374 ttttt 378  Q
    |||||    
T  48403888 ttttt 48403884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 48506681 - 48506590
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| ||||||||||  ||||||||||||| ||||||||| |||| |||||| | |||||||| |||||  ||||||||||||||||    
T  48506681 tcaacatccactttttcaattttcaacactccacatcattttctctctcttaattcaacactcattcaattttta-actctccaatggttttt 48506590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 55560554 - 55560463
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |   |||||| |||||| ||||||||||||||||    
T  55560554 tcaacatccactttttcaattcccaacactccacatcattttctctctcttaattcaacacctattcaatttttac-ctctccaatggttttt 55560463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 3618539 - 3618437
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  | ||||| |||||| ||||||||||||    
T  3618539 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttac-ctctccaatggt 3618441  T
Q  375 tttt 378  Q
    ||||    
T  3618440 tttt 3618437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 8991769 - 8991871
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| ||||| |||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  8991769 ttcaacaaccttcaacacccactttttgaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 8991867  T
Q  375 tttt 378  Q
    ||||    
T  8991868 tttt 8991871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 52772740 - 52772795
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattccaacactccacattattttctct 332  Q
    ||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||    
T  52772740 ttcaacaacctttaacacccattttttcaattctaacactccacattattttctct 52772795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 52017352 - 52017432
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| ||||||| |||| ||||||||| ||||| ||||| | |||||||| |||||| ||||||||||||||||    
T  52017352 tttttcaattcctaacactcaacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 52017432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 19272768 - 19272871
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||  | |||||||||||| |||||||||||| ||||||||| || | |||||| || ||||||| ||||| |||||||||| |    
T  19272768 tttcaatacccttcaacatttactttttcaattcccaacactccacatcattttctctctcataattcaacatccattcaattttta-tctctccaatag 19272866  T
Q  374 ttttt 378  Q
    |||||    
T  19272867 ttttt 19272871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 35809148 - 35809251
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| || | |||||| |  ||||||| |||||| ||||||||| |    
T  35809148 tttcaatacccttcaacatccactttttcaattcccaacattccacatcattttctctctcataattcaacacccattcaatttttac-ctctccaatag 35809246  T
Q  374 ttttt 378  Q
    |||||    
T  35809247 ttttt 35809251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 23540512 - 23540410
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||| ||||||||| |||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||| |    
T  23540512 ttcaacaaccttcaacacccactttttcaatttccaacactcaacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatgat 23540414  T
Q  375 tttt 378  Q
    ||||    
T  23540413 tttt 23540410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 33077948 - 33077858
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||| ||||| |||||||||| |||||||||||||| ||||||||| | | ||| || |  ||||||| |||||| ||||||||||||||||    
T  33077948 tcaatatccactttttcaatttccaacactccacatcattttctctctttaatttaacacccattcaatttttac-ctctccaatggttttt 33077858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 18469432 - 18469348
Alignment:
Q  299 tttttcaattcc-aacactccacattattttct-ctttctta-ttcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||||| |||||||||||| ||||| | || ||||| ||||| || ||||||| |||||| |||||||||||||||||||    
T  18469432 tttttcaattcccaacactccacatcatttttttctctcttaattcaacatccattcaatttttac-ctctccaatggtttttcat 18469348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 56054016 - 56054065
Alignment:
Q  290 aacatccattttttcaattcc-aacactccacattattttctctttctta 338  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| |||||    
T  56054016 aacatccactttttcaattcccaacactccacatcattttctctctctta 56054065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 39418401 - 39418300
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    ||||||| || | ||||| |||||||||||||| ||||| ||||||||    ||||| | ||||| || ||| |||||| ||||||||||| |||| |||    
T  39418401 ttcaacaacacttaacattcattttttcaattctcaacattccacatt----tctctcttttatttaacatttattcaatttttactctcttcaatagtt 39418306  T
Q  376 tttcat 381  Q
    ||||||    
T  39418305 tttcat 39418300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 123975 - 124104
Alignment:
Q  251 ttagaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaa-ttccaacactccacattattttctctttcttattcaatattca 349  Q
    |||||||||||  |||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||  |||||||||| | |||    
T  123975 ttagaccatctataatggttttttctttcaacaccattcaacatccactttttcaatttccaacactccacatcattttttc--tcttattcaacactca 124072  T
Q  350 ttcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||  ||||||||||||||||||    
T  124073 ttcaacttttaccatctccaatggtttttcat 124104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 928000 - 927873
Alignment:
Q  255 accatctccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattca 353  Q
    |||||| |||||| ||||| |||||||||| |||||||| ||| ||||| |||||| |||||||||||| ||||||||| |||||||||| | |||||||    
T  928000 accatccccaatggtttttcctttcaacactattcaacacccacttttttaattcccaacactccacatcattttctctctcttattcaacactcattca 927901  T
Q  354 acttttactctctccaatggtttttcat 381  Q
    |||||||| ||||| |||||||||||||    
T  927900 acttttacactctctaatggtttttcat 927873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 37245491 - 37245593
Alignment:
Q  280 aacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||||||||||    
T  37245491 aacaccattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggttttt 37245590  T
Q  379 cat 381  Q
    |||    
T  37245591 cat 37245593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 31193060 - 31192965
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||| | |||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  31193060 ttcaacacctattttttcaatttccaacactccacatcattttctctctcttattcaatactcattcaacttttaccctctccaatggtttttcat 31192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 1987106 - 1987211
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtt 375  Q
    |||||||| ||||||||| || ||||||||||| ||||||||||||| ||||||| | |||||||||| | ||||||||||||||| |||||||||| ||    
T  1987106 ttcaacactattcaacattcactttttcaattctcaacactccacatcattttctatctcttattcaacactcattcaacttttaccctctccaatgatt 1987205  T
Q  376 tttcat 381  Q
    ||||||    
T  1987206 tttcat 1987211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 9074305 - 9074206
Alignment:
Q  282 caccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttca 380  Q
    |||||||||||| ||| ||||| |||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  9074305 caccattcaaca-ccacttttttaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttca 9074207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 5146822 - 5146692
Alignment:
Q  253 agaccatctccaatgatttttgctttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcat 350  Q
    |||||||| |||||| ||||| ||||||| ||| ||||||| ||||||||| |||| |||||||||||||| ||||||||| || |||||||| | ||||    
T  5146822 agaccatccccaatggttttttctttcaatacccttcaacacccatttttttaatttccaacactccacatcattttctctctctttattcaacactcat 5146723  T
Q  351 tcaacttttactctctccaatggtttttcat 381  Q
    | ||||||||| |||| ||||| ||||||||    
T  5146722 ttaacttttaccctctgcaatgatttttcat 5146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 38901715 - 38901812
Alignment:
Q  285 cattcaacatccattttttcaattccaa-cactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||||||  || |||||||||||||| |||||||||| ||||||||| |||||||||| | || |||||||||||| |||||||||||||||||||    
T  38901715 cattcaacacacactttttcaattccaaacactccacatcattttctctctcttattcaacactcgttcaacttttaccctctccaatggtttttcat 38901812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 4296852 - 4296756
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  4296852 accattcaacacccactttttcaattcccaacactccacattattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 4296756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 6362952 - 6363043
Alignment:
Q  288 tcaacatccattttttcaattccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||| |||| |||||| | ||||||||||||||| |||| |||| ||||||    
T  6362952 tcaacatccactttttcaattccaacactctacatcattttctctctcttaattcaacactcattcaacttttaccctctacaattgttttt 6363043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 12855012 - 12855108
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  12855012 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttac-ctctccaatggttttt 12855108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 30822664 - 30822568
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  30822664 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttac-ctctccaatggttttt 30822568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 381
Target Start/End: Complemental strand, 31174262 - 31174167
Alignment:
Q  286 attcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    |||||| ||||| |||||||||||| |||||||||||||||||  ||| |||||||||| | |||||||||||||||  || |||||||||||||||    
T  31174262 attcaatatccactttttcaattcccaacactccacattattta-tctctcttattcaacactcattcaacttttaccatccccaatggtttttcat 31174167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 36855838 - 36855758
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||| ||||||||| ||| |||||||||| | ||||||||||||||| |||||||||| |||||    
T  36855838 tttttcaattcccaacactccccattattttttctctcttattcaacactcattcaacttttaccctctccaatgattttt 36855758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 13151571 - 13151468
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| ||||||||| ||| |||||||||||| |||||| ||||| ||||| | | ||||| ||||| | ||||||||||||||| ||||||||||||    
T  13151571 ttcaacaacattcaacacccactttttcaattcccaacactgcacataattttttttctcttaattcaacactcattcaacttttaccctctccaatggt 13151472  T
Q  375 tttt 378  Q
    ||||    
T  13151471 tttt 13151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 8852050 - 8852146
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | ||||| || ||||| |||||||||||||||||    
T  8852050 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcatttaattttta-tctctccaatggttttt 8852146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 24997073 - 24997169
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||| ||||||    
T  24997073 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttac-ctctccaatagttttt 24997169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 14152154 - 14152051
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctct-ttcttattcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| ||||||||| ||| |||||||||| |||||||||||||| ||||||||| || | |||||| |  ||||||||||||||  ||| |||||||    
T  14152154 ttcaacaacattcaacacccactttttcaattcccaacactccacatcattttctctcttttaattcaacacccattcaacttttaccatcttcaatggt 14152055  T
Q  375 tttt 378  Q
    ||||    
T  14152054 tttt 14152051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 22351701 - 22351599
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  22351701 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 22351603  T
Q  375 tttt 378  Q
    ||||    
T  22351602 tttt 22351599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 36209562 - 36209460
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| | | ||||||||||| ||||||||||||| |||||||||||||| |||||| | |||||||| ||||| ||||||| ||||    
T  36209562 tttcaatacccttcaacacctactttttcaattctcaacactccacatcattttctctttcttaattcaacactcattcaattttta-tctctcctatgg 36209464  T
Q  374 tttt 377  Q
    ||||    
T  36209463 tttt 36209460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 2780839 - 2780718
Alignment:
Q  261 tccaatgatttttgctttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaactttt 359  Q
    ||||||||||||  |||||||| || ||| || |||| |||||||||||| |||| || |||| ||||||||| |||||||||| |   ||| |||||||    
T  2780839 tccaatgattttctctttcaacgcccttctacgtccactttttcaattcctaacattctacatcattttctctctcttattcaacacctatttaactttt 2780740  T
Q  360 actctctccaatggtttttcat 381  Q
    |||||||| |||  ||||||||    
T  2780739 actctctctaataatttttcat 2780718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 17929343 - 17929286
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctct 332  Q
    |||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  17929343 tttcaatacccttcaacatccattttttcaattcccaacactccacatcattttctct 17929286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 39434090 - 39433993
Alignment:
Q  285 cattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||| ||| |||||||||| |||||| ||||||| ||||| ||| | ||||| || | ||||||||||||||  |||||||||| ||||||||    
T  39434090 cattcaacacccactttttcaatttccaacattccacatcattttttctcttttattaaacactcattcaacttttatcctctccaatgatttttcat 39433993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 1073159 - 1073068
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| ||||||||||  ||||||||||| | ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  1073159 tcaacatccactttttcaattttcaacactccacttcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 1073068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 17485803 - 17485906
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttc-ttattcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||||||| |||||||||| |||||||||||||| ||||||||| || | |||||| | |||||||| |||||| ||||| ||||     
T  17485803 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacactcattcaatttttac-ctctctaatga 17485901  T
Q  374 ttttt 378  Q
    |||||    
T  17485902 ttttt 17485906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 43021728 - 43021827
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  43021728 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 43021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 39490129 - 39490235
Alignment:
Q  276 tttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatgg 373  Q
    |||||| ||| ||||||| ||| |||||||||| ||||||||||| || ||| ||||| |||| |||||| | |||||||| ||||| |||||||||||     
T  39490129 tttcaatacccttcaacacccactttttcaattcccaacactccaaatcattctctctctcttaattcaacactcattcaattttta-tctctccaatga 39490227  T
Q  374 tttttcat 381  Q
    ||||||||    
T  39490228 tttttcat 39490235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 14382965 - 14383056
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||| ||||| ||||| |    ||||| |||||| ||||||||||||||||    
T  14382965 tcaacatccactttttcaattcctaacactccacatcattttctctctcttaattcaacaccttttcaatttttac-ctctccaatggttttt 14383056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 6333464 - 6333397
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaa 343  Q
    ||||||| ||||||||||||| |||||||||||| || | |||| || ||||||||| ||||||||||    
T  6333464 ttcaacaacattcaacatccactttttcaattcctaatattccatatcattttctctctcttattcaa 6333397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 7588591 - 7588487
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt---attcaatattcattcaacttttactctctccaatg 372  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||    |||||| |  ||||||| |||||| ||||||||||    
T  7588591 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctctcttaattcaacacccattcaatttttac-ctctccaatg 7588493  T
Q  373 gttttt 378  Q
    ||||||    
T  7588492 gttttt 7588487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 1308774 - 1308728
Alignment:
Q  287 ttcaacatccattttttcaatt-ccaacactccacattattttctct 332  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||    
T  1308774 ttcaacatccactttttcaatttccaacactccacatcattttctct 1308728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 36526821 - 36526870
Alignment:
Q  290 aacatccattttttcaattcc-aacactccacattattttctctttctta 338  Q
    |||| ||| |||||||||||| |||||||||||||||||||||| |||||    
T  36526821 aacacccactttttcaattcccaacactccacattattttctctctctta 36526870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 9117810 - 9117901
Alignment:
Q  288 tcaacatccattttttcaattc-caacactccacattattttctctttctta-ttcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| ||||||||||  ||||||||||  | ||||||||| ||||| ||||| | |||||||| |||||| ||||||||||||||||    
T  9117810 tcaacacccactttttcaattttcaacactccatttcattttctctctcttaattcaacactcattcaatttttac-ctctccaatggttttt 9117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 29428598 - 29428499
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttcat 381  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||| |||||||||||||    
T  29428598 accattcaacatccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttacactctcaaatggtttttcat 29428499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 6380569 - 6380470
Alignment:
Q  282 caccattcaacatccattttttcaattcc-aacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggtttttca 380  Q
    |||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||||||| |  |||||||||||||| ||||||||||||||||||    
T  6380569 caccattcaaca-ccactttttcaattcccaacactccacatcattttctctctcttattcaacacacattcaacttttaccctctccaatggtttttca 6380471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 8669875 - 8669980
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||||||| |||||||||| |||||||| ||||||||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  8669875 ttcaacaaccttcaacatccactttttcaatttccaacacttcacattattttctctctcttaattcaacacccattcaatttttac-ctctccaatggt 8669973  T
Q  375 ttttcat 381  Q
    |||||||    
T  8669974 ttttcat 8669980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 631509 - 631605
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||    
T  631509 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttac-ctctccaatggttttt 631605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 6725678 - 6725609
Alignment:
Q  309 ccaacactccacattattttctctttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| ||| |||||||||||    
T  6725678 ccaacactccacatcattttctctctcttattcaacactcattcaacttttactatcttcaatggttttt 6725609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 24933359 - 24933266
Alignment:
Q  287 ttcaacatccattttttcaattccaacactccacattattttctctttc-ttattcaatattcattca--acttttactctctccaatggttttt 378  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| || | |||||| | |||||||  | |||||| ||||||||||||||||    
T  24933359 ttcaacatccattttttcaatttcaacactccacattattttctctctcataattcaacactcattcaatatttttac-ctctccaatggttttt 24933266  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 8660544 - 8660646
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggt 374  Q
    ||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||    
T  8660544 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacacattcaatttttac-ctctccaatggt 8660642  T
Q  375 tttt 378  Q
    ||||    
T  8660643 tttt 8660646  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 8218964 - 8219032
Alignment:
Q  310 caacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||||||||||||||| |||| |||||| |  |||||||||||||| ||||||||||||||||    
T  8218964 caacactccacattattttctctctcttaattcaacacccattcaacttttac-ctctccaatggttttt 8219032  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 17961344 - 17961248
Alignment:
Q  283 accattcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||| ||| |||||| ||||||||||||||||    
T  17961344 accattcaacacccactttttcaattcccaacactccacataattttctctctcttaattcaacaaacatacaatttttac-ctctccaatggttttt 17961248  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 34328272 - 34328368
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||| ||| |||||||||| |||||||||||||| ||||| ||| |||| |||||| | |||||||| ||||||  |||||||||||||||    
T  34328272 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac-atctccaatggttttt 34328368  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 10883868 - 10883959
Alignment:
Q  288 tcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||| |||||    
T  10883868 tcaacatccactttttcaatttccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatgattttt 10883959  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 30446240 - 30446331
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||||||||| |||||    
T  30446240 tcaacacccattttttcaattcctaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatgattttt 30446331  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 22627821 - 22627927
Alignment:
Q  277 ttcaacaccattcaacatccattttttcaatt-ccaacactccacattattttctctttcttattcaatattcattc-aacttttactctctccaatggt 374  Q
    ||||||| || |||||| |||  ||||||||| |||||||||||||| ||||||||| | |||||||| || ||||| ||||||||   ||||||||| |    
T  22627821 ttcaacaacactcaacacccacgttttcaatttccaacactccacatcattttctctcttttattcaacatccattcaaacttttatcttctccaatgat 22627920  T
Q  375 ttttcat 381  Q
    |||||||    
T  22627921 ttttcat 22627927  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 197795 - 197891
Alignment:
Q  283 accattcaacatccattttttcaatt-ccaacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    ||||||||||||||| |||||||||| |||||||||||| | ||||||||| |||| |||||| |  ||||||| ||||||  ||||||||| |||||    
T  197795 accattcaacatccactttttcaattcccaacactccacgtcattttctctctcttaattcaacacccattcaatttttac-atctccaatgattttt 197891  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 34838588 - 34838668
Alignment:
Q  299 tttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| ||||||||||||||||    
T  34838588 tttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctctccaatggttttt 34838668  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 24348429 - 24348520
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctct-ttcttattcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| || | |||||| || ||||||| |||||| |||| |||||||||||    
T  24348429 tcaacacccactttttcaattcccaacactccacatcattttctctcttttaattcaacatccattcaatttttac-ctcttcaatggttttt 24348520  T

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Target: scaffold0362 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 5398 - 5307
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| |||||||||||||| |||||| || ||||||| |||||| ||||||| ||||||||    
T  5398 tcaacacccactttttcaattcccaacactccacatcattttctctttcttaattcaacatccattcaatttttac-ctctccactggttttt 5307  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 57818 - 57727
Alignment:
Q  288 tcaacatccattttttcaattcc-aacactccacattattttctctttctt-attcaatattcattcaacttttactctctccaatggttttt 378  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||||| |||| |||||| |  ||||||| |||||| |||| |||||||||||    
T  57818 tcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaatttttac-ctcttcaatggttttt 57727  T

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