View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_62 (Length: 387)
Name: NF16561_low_62
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 21821290 - 21821646
Alignment:
| Q |
18 |
caaagaacgtgtaagatgttatttggacaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacac |
117 |
Q |
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| T |
21821290 |
caaagaacgtgtaagatgttatttggacaaatcaaacgtgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacac |
21821389 |
T |
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| Q |
118 |
caaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacat |
217 |
Q |
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| T |
21821390 |
caaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcaagaaaattgatagaacat |
21821489 |
T |
|
| Q |
218 |
tgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagttagcttccatgaaatcactaacacacaaccaccaccatctc |
317 |
Q |
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| T |
21821490 |
tgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagttagcttccatgaaatcactaacacacaaccaccaccatctc |
21821589 |
T |
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| Q |
318 |
ttgtacttccatccgctgaaattaattcacccactcttaatgcatccaacaatacct |
374 |
Q |
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| T |
21821590 |
ttgtacttccatccactgaaattaattcacccactcttaatgcatccaacaatacct |
21821646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 288
Target Start/End: Original strand, 11450548 - 11450793
Alignment:
| Q |
44 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
143 |
Q |
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| T |
11450548 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacataagagtccaagctcttggaacaccaaaataaaagactgtcaatccaaaa |
11450647 |
T |
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| Q |
144 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
243 |
Q |
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| T |
11450648 |
tgaaaatctaaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgacagacctttgactaaatttgataatgttattgaa |
11450747 |
T |
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| Q |
244 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
288 |
Q |
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| T |
11450748 |
gagtttatcattggtgggattgacaaaagcaaattagcttacatga |
11450793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 288
Target Start/End: Complemental strand, 11544187 - 11543942
Alignment:
| Q |
44 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
143 |
Q |
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| T |
11544187 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacacaagagtccaagctcttggaacaccaaaataaaagtctgtcaatccaaaa |
11544088 |
T |
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| Q |
144 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
243 |
Q |
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| T |
11544087 |
tgaaaatctcaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgaaaaacctttgactaaatttgataataatattgaa |
11543988 |
T |
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| Q |
244 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
288 |
Q |
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| T |
11543987 |
gagtttatcattggtggaattgacaaaagaaaattagcttacatga |
11543942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 261
Target Start/End: Complemental strand, 14863852 - 14863666
Alignment:
| Q |
74 |
aacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaatttt |
173 |
Q |
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|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| ||| ||| || | ||||||| ||||||| |
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| T |
14863852 |
aacagtttgatttgttgacagaagaatctaagttcttgaaacaccaaaacaagagtttgtcgatccaaaatgaaattctcatgatgagaaataaaatttt |
14863753 |
T |
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| Q |
174 |
ggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggt |
261 |
Q |
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| T |
14863752 |
ggagaaagatcaattttcaaacatc-aagaagttgacagacccttgacaaaatgtgataatgctcttgaagagtctatcatgggtggt |
14863666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 24247621 - 24247693
Alignment:
| Q |
217 |
ttgacaaaattcgataatgctcttgaagaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
288 |
Q |
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| T |
24247621 |
ttgataaaatttgataatgttcttgaagattttatcattggtagtattggcaaaagcaagttagcttccatga |
24247693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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