View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_65 (Length: 377)
Name: NF16561_low_65
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 47806932 - 47806586
Alignment:
| Q |
19 |
aacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatgactttctttttaaagattggaaacaacttatcgtcagggaag |
118 |
Q |
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| T |
47806932 |
aacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatgactttctttttaaagattggaaacaacttatcgtcagggaag |
47806833 |
T |
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| Q |
119 |
aattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgagagattttacatcccttcgcatcattggttcggtttcatatc |
218 |
Q |
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| T |
47806832 |
aattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgagagattttacatcccttcgcatcattggttcggtttcatatc |
47806733 |
T |
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| Q |
219 |
tccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattgccctgaactataccgcttccgtttgtttggcttatgcatacctga |
318 |
Q |
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| T |
47806732 |
tccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattcccctgaactatagcgcttccgtttgttcggcttatgcatacctga |
47806633 |
T |
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| Q |
319 |
ataatcttcatttccattggagtcattttgtttttcttctttgcctt |
365 |
Q |
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| T |
47806632 |
ataaccttcatttccattggagtcattttgtttttcttcttcgcctt |
47806586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 328
Target Start/End: Complemental strand, 47804329 - 47804079
Alignment:
| Q |
78 |
ctttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgag |
177 |
Q |
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| T |
47804329 |
ctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgag |
47804230 |
T |
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| Q |
178 |
agattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattgccct |
277 |
Q |
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| T |
47804229 |
agatcttattccccattgcatcattggttcggttttgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccgacaaattccatt |
47804130 |
T |
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| Q |
278 |
gaactataccgcttccgtttgtttggcttatgcatacctgaataatcttca |
328 |
Q |
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| T |
47804129 |
gaactataccgattctgtttcttcagcttatgcacacctgtatattcttca |
47804079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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