View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_66 (Length: 367)
Name: NF16561_low_66
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 33993354 - 33993002
Alignment:
| Q |
1 |
ctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagctcagcaaccaaatttcctgg |
100 |
Q |
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| T |
33993354 |
ctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagctcagcaaccaaatttcctgg |
33993255 |
T |
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| Q |
101 |
agaaagcctcttcccgttcagcgatactggaatgcctaactcaaatccaatctccacatatctgcgacacactttccaagtaagtagtgaaactaaacga |
200 |
Q |
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| T |
33993254 |
agaaagcctcttcccgttcagcgatactggaatgcctaactcaaatccaatctccacatatctgcgacacactttccaagtaagtagtgaaactaaacga |
33993155 |
T |
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| Q |
201 |
gagctaattctggatataatgaatgttttaatttgcattaatggttgtggccgcgtcactatctttgatatcactaagaagcatggtcaaatgtggctga |
300 |
Q |
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| T |
33993154 |
gagctaattctggatataatgaatgttttaatttgcattaatggttgtggccgcgtcactatctttgatatcactaagaagcatggtcaaatgtggctga |
33993055 |
T |
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| Q |
301 |
tgcagccttaatcgtggtcctgttacggttaaggctggttgcagccatgttgc |
353 |
Q |
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| T |
33993054 |
tgcagccttaatcgtggtcctgttacggttaaggctggttgcagccatgttgc |
33993002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 34000356 - 34000175
Alignment:
| Q |
1 |
ctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagctcagcaaccaaatttcctgg |
100 |
Q |
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| T |
34000356 |
ctcggctcttcaggcctacaatgtggttttcaactatatcgacacagcctattccatgccttccacctatctcattaagctcagcaaccaaatttcctgg |
34000257 |
T |
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| Q |
101 |
agaaagcctcttcccgttcagcgatactggaatgcctaactcaaatccaatctccacatatctgcgacacactttccaagta |
182 |
Q |
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| T |
34000256 |
ggatagcctcttcccgttcactgtcactggaatgcctgactcaaatcctatctccacatatctgcaacagattttccgagta |
34000175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 18852616 - 18852698
Alignment:
| Q |
3 |
cggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagctcagc |
85 |
Q |
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| T |
18852616 |
cggcttttcatgcctacaagccgattctcaaccatgtcgatccggccaattccgtgccttccacctatctcattgagctcagc |
18852698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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