View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_7 (Length: 736)
Name: NF16561_low_7
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 210 - 470
Target Start/End: Complemental strand, 6181632 - 6181372
Alignment:
| Q |
210 |
aaaagagaagactaaagccatgttggttttacaccaaatagacataatcccaacgttatgccaaccgacggagtgaaactccaatcacaaaaagaattat |
309 |
Q |
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| T |
6181632 |
aaaagagaagactaaagtcaagttggttttacatcaaatagacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattct |
6181533 |
T |
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| Q |
310 |
atcaaaggtaaataaattagagcatatgaaatttgatctaacttagtttcatgtatcacaacgaaaatcaagatggttatatgcaatgaagtcttgtacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6181532 |
atcaaaggtaaataaattagagcatatgaaatttgatctaacttagtttcatgtatcacaacgaaaatcaagatggttatatgcaatgaagtctcgtacc |
6181433 |
T |
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| Q |
410 |
ttagtcttcttgatcctaccatctagacctttaatattaatagatcctataatcatctatt |
470 |
Q |
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|| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
6181432 |
tttgtcttcttgatcctaccatctagacccttaatattattagatcctataatcatctatt |
6181372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 210 - 470
Target Start/End: Complemental strand, 6221807 - 6221547
Alignment:
| Q |
210 |
aaaagagaagactaaagccatgttggttttacaccaaatagacataatcccaacgttatgccaaccgacggagtgaaactccaatcacaaaaagaattat |
309 |
Q |
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| T |
6221807 |
aaaagagaagactaaagtcaagttggttttacatcaaatagacataatcccaacattatgtcaaccgacggagtgaaactccaatcacaaaaagaattct |
6221708 |
T |
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| Q |
310 |
atcaaaggtaaataaattagagcatatgaaatttgatctaacttagtttcatgtatcacaacgaaaatcaagatggttatatgcaatgaagtcttgtacc |
409 |
Q |
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| T |
6221707 |
atcaaaggtaaataaattagagcatatgaaatttgatctaacttagtttcatgtatcacaacgaaaatcaagatggttatatgcaatgaagtctcgtacc |
6221608 |
T |
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| Q |
410 |
ttagtcttcttgatcctaccatctagacctttaatattaatagatcctataatcatctatt |
470 |
Q |
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| T |
6221607 |
tttgtcttcttgatcctaccatctagacccttaatattattagatcctataatcatctatt |
6221547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 6182443 - 6182272
Alignment:
| Q |
32 |
tccaacaaactggtgtaacaattgattcgatcttggatacaacaattttaattttcaacaatggcgaattccacaaacaacggacattttccctacaaat |
131 |
Q |
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| T |
6182443 |
tccaacaaactggtgtaacaattgattcgatcttggatacaacaattttaattttcaacaatggcgaattccacaaacaatggacatttttcctgcaaat |
6182344 |
T |
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| Q |
132 |
cttcccatcttcaaaggtcagaaatgtgacgagtggtgtcctaaaatgaaagtcatattcagatttcaagat |
203 |
Q |
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| T |
6182343 |
cttcccatcttcaaaggtcagaaatgtgacaagtggtgtcctaaaatgaaagtcatattcagatttcaagat |
6182272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 6222618 - 6222447
Alignment:
| Q |
32 |
tccaacaaactggtgtaacaattgattcgatcttggatacaacaattttaattttcaacaatggcgaattccacaaacaacggacattttccctacaaat |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
6222618 |
tccaacaaactggtgtaacaattgattcgatcttggatacaacaattttaattttcaacaatggcgaattccacaaacaatggacatttttcctgcaaat |
6222519 |
T |
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| Q |
132 |
cttcccatcttcaaaggtcagaaatgtgacgagtggtgtcctaaaatgaaagtcatattcagatttcaagat |
203 |
Q |
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| T |
6222518 |
cttcccatcttcaaaggtcagaaatgtgacaagtggtgtcctaaaatgaaagtcatattcagatttcaagat |
6222447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 6180085 - 6180000
Alignment:
| Q |
466 |
ctattcacctcaacaaacttccttcaccttgtcaaaagaatatcttatacatcaaaaaccatcatcttatcagtctaaaaaccatc |
551 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| | |||||||| |||||||||||||||||||||||||||| |
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| T |
6180085 |
ctattcacctcaacaaacttccttcaccttgtcatgataatatctttttcatcaaaacccatcatcttatcagtctaaaaaccatc |
6180000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 663
Target Start/End: Complemental strand, 29832081 - 29832021
Alignment:
| Q |
604 |
tgatgtttgtttttattttgatattatagcatag-attatgttaaagcacctagcaaacta |
663 |
Q |
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| T |
29832081 |
tgatgattgttttgtttttgatattatagcatagaattatgttaaatcacctagcaaacta |
29832021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 656
Target Start/End: Complemental strand, 17304928 - 17304882
Alignment:
| Q |
610 |
ttgtttttattttgatattatagcatagattatgttaaagcacctag |
656 |
Q |
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| T |
17304928 |
ttgtttttattttggtagtatagcataaactatgttaaagcacctag |
17304882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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