View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_70 (Length: 360)
Name: NF16561_low_70
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_70 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 86 - 352
Target Start/End: Complemental strand, 17230696 - 17230430
Alignment:
| Q |
86 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcataaaactaaacaaaatgcaaattattgatttg |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17230696 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcagaaaactaaacaaaatgcaaattattgatttg |
17230597 |
T |
|
| Q |
186 |
tgtaactaggcacttctatgtgatgatttatttaacgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17230596 |
tgtaactaggcacttctatgtgatgatttatttaacgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
17230497 |
T |
|
| Q |
286 |
aatggtttatgtacttagaaatacattttgcttttgacaagagaccatttcataagaaattcatttc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
17230496 |
aatggtttatgtacttagaaatacattttgcttttgacaagaaaccatttcctaagaaattcatttc |
17230430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 86 - 352
Target Start/End: Complemental strand, 28049506 - 28049240
Alignment:
| Q |
86 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcataaaactaaacaaaatgcaaattattgatttg |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28049506 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcagaaaactaaacaaaatgcaaattattgatttg |
28049407 |
T |
|
| Q |
186 |
tgtaactaggcacttctatgtgatgatttatttaacgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
285 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28049406 |
tgtaactaggcagttctatgtgatgatttatttaacgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
28049307 |
T |
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| Q |
286 |
aatggtttatgtacttagaaatacattttgcttttgacaagagaccatttcataagaaattcatttc |
352 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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| T |
28049306 |
aatggtttctgtacttagaaatacattttgcttttgacaagaaaccatttcctaagaaactcatttc |
28049240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 86 - 352
Target Start/End: Complemental strand, 19851012 - 19850746
Alignment:
| Q |
86 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcataaaactaaacaaaatgcaaattattgatttg |
185 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19851012 |
aaaatagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcagaaaactaaacaaaatgcaaattattgatttg |
19850913 |
T |
|
| Q |
186 |
tgtaactaggcacttctatgtgatgatttatttaacgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
285 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19850912 |
tgtaactaggcacttctatgtgatgatttatttaatgtggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttggga |
19850813 |
T |
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| Q |
286 |
aatggtttatgtacttagaaatacattttgcttttgacaagagaccatttcataagaaattcatttc |
352 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
19850812 |
aatggtttctgtacttagaaatacattttgcttttgacaagaaaccatttcctaagaaattcatttc |
19850746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 8169 - 8041
Alignment:
| Q |
224 |
ggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttgggaaatggtttatgtacttagaaatacattttgcttttgac |
323 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8169 |
ggttatgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttgggaaatggtttctgtacttagaaatacattttgcttttgac |
8070 |
T |
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| Q |
324 |
aagagaccatttcataagaaattcatttc |
352 |
Q |
| |
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|||| ||||||| ||||||||||||||| |
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| T |
8069 |
aagaaaccattttctaagaaattcatttc |
8041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 28129582 - 28129454
Alignment:
| Q |
224 |
ggttttgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttgggaaatggtttatgtacttagaaatacattttgcttttgac |
323 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28129582 |
ggttatgaagaaatacattagtatgaatatatttttaactttgcactattttctgcttgggaaatggtttctgtacttagaaatacattttgcttttgac |
28129483 |
T |
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| Q |
324 |
aagagaccatttcataagaaattcatttc |
352 |
Q |
| |
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|||| ||||||| ||||||||||||||| |
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| T |
28129482 |
aagaaaccattttctaagaaattcatttc |
28129454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 5970352 - 5970502
Alignment:
| Q |
86 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttccaacttccatatatgcataaaactaaacaaaatgcaaattattgatttg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| ||||||||| |||||| ||||||||| |||||||||||||| |
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| T |
5970352 |
aaaacagaatgaatgaaatggcttgaataggtgagtttattaatgcagttcctatttctatatatgcagaaaactgaacaaaatgaaaattattgatttg |
5970451 |
T |
|
| Q |
186 |
tgtaactaggcacttctatgtgatgatttattta-acgtggttttgaagaa |
235 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
5970452 |
tgtaactaggcacttctattagatgatttatttacacgtggttttgaagaa |
5970502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 352
Target Start/End: Original strand, 1374714 - 1374835
Alignment:
| Q |
231 |
aagaaatacattagtatgaatatatttttaactttgcactattttctgcttgggaaatggtttatgtacttagaaatacattttgcttttgacaagagac |
330 |
Q |
| |
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|||||| |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | |
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| T |
1374714 |
aagaaagacattagtatcaagatatttttaactttgcattattttctgcttgggaaatggtttatgtactcataaattcattttgcttttgacaagaaat |
1374813 |
T |
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| Q |
331 |
catttcataagaaattcatttc |
352 |
Q |
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|||||| |||||||||||||| |
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| T |
1374814 |
catttcccaagaaattcatttc |
1374835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 4183871 - 4183921
Alignment:
| Q |
86 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4183871 |
aaaacagaatgaatgaaatggcttgaataagtgagtttattaatacagttc |
4183921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 41241435 - 41241399
Alignment:
| Q |
52 |
gaaaaaggtgcatatgcatatgttcaagccatccaaa |
88 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
41241435 |
gaaaaaggtacatatgcatatgttcaagccatccaaa |
41241399 |
T |
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