View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_71 (Length: 358)
Name: NF16561_low_71
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 2501087 - 2501419
Alignment:
| Q |
11 |
atgaatgtattttagactggactagaagtaaagtaacatgtcacccattaaaagagtat----tttttggggactcaattgaatgtcaggattctttgtc |
106 |
Q |
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| T |
2501087 |
atgaatgtattttagactggagtagaagtaa-----catgtcacccattaaaagagtacattatttttggggactcaattgaatgtcaggattctttgtc |
2501181 |
T |
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| Q |
107 |
acggaaaaaattggtgttttgagtcattgaattcaataatgaaagctactctactctactgtcctccaatatttactct--ccgtatttatctgaccgct |
204 |
Q |
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| T |
2501182 |
acggaaaaaattggtgttttgagtcattgaattcaataatgaaagctactctactctactgtcctccaatatttactctctccgtatttatctgaccgct |
2501281 |
T |
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| Q |
205 |
ttcacatgactaccctgcaaccaagcataccgacaaacacactgtactactctgtattttcatttcattattcaaatttcaataaattttcttctgtcac |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2501282 |
ttcacatgactaccctgcaaccaagcatactgacaaacacactgtactactctgaattttcatttcattattcaaatttcaataaattttcttctgtcac |
2501381 |
T |
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| Q |
305 |
acccttcactattgcattccccatccaaaataatattc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2501382 |
acccttcactattgcattccccatccaaaataatattc |
2501419 |
T |
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