View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_73 (Length: 355)

Name: NF16561_low_73
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_73
NF16561_low_73
[»] chr7 (1 HSPs)
chr7 (43-339)||(682875-683171)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 43 - 339
Target Start/End: Original strand, 682875 - 683171
Alignment:
Q  43 acaacaataacaacatatacactaatactattagcacctccattactcctaaacagacacaaaaaatcacacacaaaatttccacttcttctactactat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  682875 acaacaataacaacatatacactaatactattagcacctccattactcctaaacacacacaaaaaatcacacacaaaatttccacttcttctactactat 682974  T
Q  143 aactactacaaaacatttagcaaatatttggagagagattcaagggtgcaacaactgggaaaatcttttaaaccctttacaccctattcttcgcgaagag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  682975 aactactacaaaacatttagcaaatatttggagagagattcaagggtgcaacaactgggaaaatcttttaaaccctttacaccctattcttcgcgaagag 683074  T
Q  243 ataattcgatatggagagtttgttacatcttcttacaaagcctttgatcttgatacaaactcaaaaagatacttgaattgtaaatatggcaaaaaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  683075 ataattcgatatggagagtttgttacatcttcttacaaagcctttgatcttgatacaaactcaaaaagatacttgaattgtaaatatggcaaaaaga 683171  T

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