View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_74 (Length: 354)
Name: NF16561_low_74
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_74 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 34787760 - 34787414
Alignment:
| Q |
8 |
acgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcc |
107 |
Q |
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| T |
34787760 |
acgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcc |
34787661 |
T |
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| Q |
108 |
tttcgtttccggagacgatactcgccgagttcggttgaatcggtgattttctgctttggaggacgtatctcagcttcttgacgctccctagcttcacgaa |
207 |
Q |
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| T |
34787660 |
tttcgtttccggagacgatactcgccgagttcggttgaatcggtgattttctgctttggaggacgtatctcagcttcttgacgctccctagcttcacgaa |
34787561 |
T |
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| Q |
208 |
gaatttgctccgctgtgatttgaatcggagcgggggttttgttcttaaccctagttggacgtggaagttttacttcagtgtcttttcgagtgaggtaacc |
307 |
Q |
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| T |
34787560 |
gaatttgctccgctgtgatttgaatcggagcgggggttttgttcttaaccctagttggacgtggaagttttacttcagtgtcttttcgagtgaggtaacc |
34787461 |
T |
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| Q |
308 |
tagggttgggtctgcaactttggtagaagacatggctagggcttgga |
354 |
Q |
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| T |
34787460 |
tagggttgggtctgcaactttggaagaagacatggctagggcttgga |
34787414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 2293437 - 2293777
Alignment:
| Q |
8 |
acgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcc |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| |
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| T |
2293437 |
acgtgcacgtgtaaaatctttctgcgactcttcccactgtgcatacttaatccaaacactgacattccaccgaactctccggattaaatcctcgaattcc |
2293536 |
T |
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| Q |
108 |
tttcgtttccggagacgatactcgccgagttcggttgaatcggtgattttctgctttggaggacgtatctcagcttcttgacgctccctagcttcacgaa |
207 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
2293537 |
tttcttttccggagacgatactcgccgagttctgttgaatcggtgattttctgctttggaggacggatctcagcttcttgacgctccctagcttcgcgga |
2293636 |
T |
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| Q |
208 |
gaatttgctccgctgtgatttgaatcggagcgggggttttgttcttaaccctagttggacgtggaagttttacttcagtgtcttttcgagtgaggtaacc |
307 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |
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| T |
2293637 |
gaatctgctccgctgtgatttgaattggagcgggggttttgttcttaaccctagttggacgtggaagcttgacttcggtatcttttcgagtgaggtaacc |
2293736 |
T |
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| Q |
308 |
tagggttgggtctgcaactttggtagaagacatggctaggg |
348 |
Q |
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| T |
2293737 |
tagggttgggtctgcatctttggaagaagacatggctaggg |
2293777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 33636242 - 33636356
Alignment:
| Q |
151 |
tgattttctgctttggaggacgtatctcagcttcttgacgctccctagcttcacgaagaatttgctccgctgtgatttgaatcggagcgggggttttgtt |
250 |
Q |
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|||||||||||||||||||||| || | || ||||| | |||||||||| |||||||| |||||||||||||||||||| || || ||| ||||||| |
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| T |
33636242 |
tgattttctgctttggaggacggattttaggctcttggagtgccctagcttcgcgaagaatctgctccgctgtgatttgaatgggtgcagggtttttgtt |
33636341 |
T |
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| Q |
251 |
cttaaccctagttgg |
265 |
Q |
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||||||||||||||| |
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| T |
33636342 |
cttaaccctagttgg |
33636356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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