View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_76 (Length: 343)
Name: NF16561_low_76
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 1320594 - 1320351
Alignment:
| Q |
66 |
cttaagatcaccaaagagaatataaacacaaattccaaaacaacaaaagagtgagaaataaacacaaattataaatacatttttgagaggaattatcaat |
165 |
Q |
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| T |
1320594 |
cttaagatcaccaaagagaatataaacacaaattccaaaacaacaaaagagtgagaaataaacacaaattataaatacatttttgagaggaattatcaat |
1320495 |
T |
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| Q |
166 |
atattttaatcttaaaaacttattaaggtcgtgcttgtttgctatctttacaagcagagtttagatatgctcatgtggacaggagcagatccaaactctt |
265 |
Q |
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| T |
1320494 |
atattttaatcttaaaaacttattaaggtcgcgcttgtttgctatctttacatgcagagtttagatatgctcatgtggactggagcggatccaaactctt |
1320395 |
T |
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| Q |
266 |
acaagtgtgaccttattaaatagacgaaattaaatcctttactt |
309 |
Q |
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| T |
1320394 |
acaagtgtgaccttattaaatagacgaaattaaatcctttactt |
1320351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 1320645 - 1320614
Alignment:
| Q |
22 |
acatgtagttaagacttaagatcacccttgac |
53 |
Q |
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| T |
1320645 |
acatgtagttaagacttaagatcacccttgac |
1320614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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