View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_77 (Length: 337)
Name: NF16561_low_77
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_77 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 33102488 - 33102156
Alignment:
| Q |
5 |
gagtagcataggacatgtgaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccccataaatat |
104 |
Q |
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| T |
33102488 |
gagtaacataggacatgggaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataatattaattgaggta-tgacatccccg-taaatat |
33102391 |
T |
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| Q |
105 |
aaacaaaatgaatgnnnnnnnnn--ttaggaggtaaatataagcatataatccacgatgctgtgcacaaaatattagtttgatgtgttttggtatccttc |
202 |
Q |
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| T |
33102390 |
aagcaaaatgaatggaaaaaaaaaattaggaggtaaatataagcatataatccacgatgctgtgcacaaaatattagcttgatgtgttttggtatccttc |
33102291 |
T |
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| Q |
203 |
caaatttcagcaaatcactcgttctgatataatcactttataaattttctctaagatattcattcaattttgtttgatgtaatatgatacactacccgag |
302 |
Q |
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| T |
33102290 |
caaatttcagcaaatcactcgttctgatataatcactttataaattttctctaagatattcattcaattttgtttgatgtaatatgatacactacccgag |
33102191 |
T |
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| Q |
303 |
ggttgatttctttttctcatagaataaaacatttg |
337 |
Q |
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| T |
33102190 |
ggttgatttctttttctcatagaataaaacatttg |
33102156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 15603089 - 15603017
Alignment:
| Q |
23 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccc |
95 |
Q |
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| T |
15603089 |
gaatgttcaatcaggcgtgtttaatcaagggaatgggaagaggcataattttgattgaggcaatgacatcccc |
15603017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 15602973 - 15602898
Alignment:
| Q |
133 |
aggtaaatataagcatataatccacgatgctgtgcaca-aaatattagtttgatgtgttttggtatccttccaaat |
207 |
Q |
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| T |
15602973 |
aggtaaatataagcatataatccatgatgatgtacatagcagtattagtttgatgtcttttggtatcatttcaaat |
15602898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 7174 - 7103
Alignment:
| Q |
23 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatccc |
94 |
Q |
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| T |
7174 |
gaatgttcaatcaggcgtgtttaatcaagggaatgggaagaggcataattttgattgaggcaatgacatccc |
7103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 42118 - 42190
Alignment:
| Q |
23 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccc |
95 |
Q |
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||||||| |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
42118 |
gaatgttcaatcagacgtgtttaatcaagggaatgaaaagaggcataattttgattgaggcaatgacatcccc |
42190 |
T |
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