View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_79 (Length: 330)
Name: NF16561_low_79
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 7329423 - 7329173
Alignment:
| Q |
7 |
gtgagatgaaaagatctattgtagctcttacttggttagtattagtgttgcattaaccgatgnnnnnnnnnnngacacgacactcttaaagtcataactt |
106 |
Q |
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| T |
7329423 |
gtgatatgaaaagatctattgtagctcttaggtggttagtattagtgtagcattaaccgatgaaaaaa-----gacacgacactcttaaagtcataactt |
7329329 |
T |
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| Q |
107 |
gtcatttnnnnnnnnnnnnnntgagattctacgtatctaactgctgggagtttggtttggaataattccaaggcaagcaatatcagtttaaaaaactcaa |
206 |
Q |
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| T |
7329328 |
gtcatt------aaaaaaaaatgagattctacgtatctaacaactgggagtttggtttggaataattgcatggcaagcaatgtcagtttaaaaaactcaa |
7329235 |
T |
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| Q |
207 |
aaggaattcaattgcagaattcaaaaaggccaaacaagaggaagataggatagatatgtaac |
268 |
Q |
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| T |
7329234 |
aaggaattcaattgcagaattcaaaaaggccaaacaagaggaagataggatagatatgtaac |
7329173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 7329152 - 7329113
Alignment:
| Q |
270 |
aaaatagcgcagaaaacatttagaaacaagttgtaaggtg |
309 |
Q |
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| T |
7329152 |
aaaatagcgcagaaaacatttagaaacaagttgtaaggtg |
7329113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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