View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_8 (Length: 711)

Name: NF16561_low_8
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_8
NF16561_low_8
[»] chr4 (7 HSPs)
chr4 (19-700)||(40035544-40036225)
chr4 (19-430)||(40045139-40045533)
chr4 (489-628)||(40044919-40045060)
chr4 (167-259)||(20155099-20155191)
chr4 (565-698)||(26394222-26394360)
chr4 (53-184)||(34748779-34748910)
chr4 (91-182)||(24860572-24860663)
[»] chr7 (6 HSPs)
chr7 (61-213)||(7803689-7803841)
chr7 (61-215)||(7813379-7813533)
chr7 (91-182)||(3929972-3930063)
chr7 (335-414)||(3930104-3930183)
chr7 (334-408)||(7803850-7803924)
chr7 (343-408)||(7813552-7813617)
[»] chr8 (5 HSPs)
chr8 (335-414)||(25865606-25865685)
chr8 (335-414)||(43479817-43479896)
chr8 (88-209)||(41943943-41944064)
chr8 (88-182)||(38799521-38799615)
chr8 (88-182)||(38821902-38821996)
[»] chr5 (1 HSPs)
chr5 (85-182)||(9866662-9866759)
[»] chr2 (3 HSPs)
chr2 (335-414)||(13576254-13576333)
chr2 (91-182)||(13576374-13576465)
chr2 (334-425)||(34571588-34571679)
[»] chr1 (2 HSPs)
chr1 (538-604)||(7594717-7594783)
chr1 (332-428)||(7594399-7594495)
[»] scaffold0197 (1 HSPs)
scaffold0197 (91-182)||(31037-31128)


Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 19 - 700
Target Start/End: Complemental strand, 40036225 - 40035544
Alignment:
Q  19 ccatctacacagcaccaaacacagcatcctccttaagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttgg 118  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036225 ccatctaaacagcaccaagcaaagcatcctccttaagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttgg 40036126  T
Q  119 catggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttgcaatgcaagcacagcatggctctggaaacgaaggtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036125 catggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttgcaatgcaagcacagcatggctctggaaacgaaggtc 40036026  T
Q  219 agtctgcaaaaacaagaaccaaaattatcagaaacaaccaaaactagcaaaactattaactaagctgattatgaaaacaaaagcacaagttcgcatatca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036025 agtctgcaaaaacaagaaccaaaattatcagaaacaaccaaaactaccaaaactattaactaagctgattatgaaaacaaaagcacaagttcgcatatca 40035926  T
Q  319 gcaattacacatcaccttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttcctt 418  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40035925 gcaattacacattaccttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttccta 40035826  T
Q  419 atctcactgtttaaaacaacaattcatataacaaccattagaaacagaacccaatacaattactaacaaaaacagaacacattgaatcataaccctaaag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40035825 atctcactgtttaaaacaacaattcatataacaaccattagaaacagaacccaatacaattactaacaaaaacagaacacattgaatcataaccctagag 40035726  T
Q  519 aaaatttcaccaaaaactcaccgaagagcaacagttccagggcggtaacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcct 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40035725 aaaatttcaccaaaaactcaccgaagagcaacagttccagggcggtaacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcct 40035626  T
Q  619 aaaggaaacacaaacacacaaaattaaccaaatattcaatcaccataacacaaataacaaccaatattacgaatatgatgat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40035625 aaaggaaacacaaacacacaaaattaaccaaatattcaatcaccataacacaaataacaaccaatattatgaatatgatgat 40035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 40045533 - 40045139
Alignment:
Q  19 ccatctacacagcaccaaacacagcatcctccttaagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttgg 118  Q
    ||||||| |||||||||||  |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40045533 ccatctaaacagcaccaaaagcagcatcctccttaggcacgctcgccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttgg 40045434  T
Q  119 catggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttgcaatgcaagcacagcatggctctggaaacgaaggtc 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40045433 catggatagcgcacaagttagtgtcctcaaagagaccaacaagatatgcctcagcagcctcttgcaatgcaagcacagcatgactctggaaacgaaggtc 40045334  T
Q  219 agtctgcaaaaacaagaaccaaaattatcagaaacaaccaaaactagcaaaactattaactaagctgattatgaaaacaaaagcacaagttcgcatatca 318  Q
    ||||||||   ||   |||||||||||| |||||| ||            |||  |||||||| |||||| |||| |||||  |||||  || || | |     
T  40045333 agtctgca---accgaaaccaaaattattagaaaccac------------aacc-ttaactaaactgattgtgaacacaaatacacaatatctcaca-ct 40045251  T
Q  319 gcaattacacatcaccttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttcctt 418  Q
      || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  40045250 ttaactacacattaccttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtacttccta 40045151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 489 - 628
Target Start/End: Complemental strand, 40045060 - 40044919
Alignment:
Q  489 aacagaacacattgaatcataaccctaaa-gaaaattt-caccaaaaactcaccgaagagcaacagttccagggcggtaacgatgtggtttcttaacccc 586  Q
    ||||||||||||||||| | ||||||||| |||||||| || || ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||    
T  40045060 aacagaacacattgaattacaaccctaaaagaaaattttcaacagaaactcaccgaagagcaacagttcctgggcggtaacgatgtggcttcttaactcc 40044961  T
Q  587 accagtagtgggtgcagacttacgtgcagcctaaaggaaaca 628  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  40044960 accagtagttggtgcagacttacgtgcagcctaaaggtaaca 40044919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 20155099 - 20155191
Alignment:
Q  167 cttcagcagcctcttgcaatgcaagcacagcatggctctggaaacgaaggtcagtctgcaaaaacaagaaccaaaattatcagaaacaaccaa 259  Q
    |||||||||||||||| |||||||||||| |||| || ||||| |||||||||||||  |||||||||||||||||| |||||||||||||||    
T  20155099 cttcagcagcctcttgaaatgcaagcacatcatgactttggaagcgaaggtcagtctataaaaacaagaaccaaaatcatcagaaacaaccaa 20155191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 698
Target Start/End: Original strand, 26394222 - 26394360
Alignment:
Q  565 aacgatgtggtttcttaaccccaccagtagtgggtgcagacttacgtgcagcctaaaggaaac--acaaacacacaaaattaaccaa--atattcaatca 660  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |  | ||||  | ||||||||||||  |||||||||||    
T  26394222 aacgacgtggtttcttaactctaccagtagtgggtgcagacttacgtgcagcctaaaggaaccgaaaaaaccaaaaaaattaaccaaatatattcaatca 26394321  T
Q  661 ccataacacaaataacaaccaat-attacgaatatgatg 698  Q
    ||||||  |||||||||  |||| |||| ||||||||||    
T  26394322 ccataatgcaaataacattcaatgattatgaatatgatg 26394360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 34748910 - 34748779
Alignment:
Q  53 aagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagag 152  Q
    |||| ||||| |||||||| | ||| || | |||||| ||||| ||||| ||||| || ||||||||||| || ||||| | |||||| |||||||||||    
T  34748910 aagcacgctcgccacggatacgcctagcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagag 34748811  T
Q  153 accaacaagatatgcttcagcagcctcttgca 184  Q
    |||||| ||||| || ||||| || |||||||    
T  34748810 accaacgagataagcctcagccgcttcttgca 34748779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 24860663 - 24860572
Alignment:
Q  91 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    |||||||||||||| ||||||| ||| ||||| ||||| || |  || || || |||||||| ||||| ||||| ||||||||||| |||||    
T  24860663 tccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttg 24860572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 7803689 - 7803841
Alignment:
Q  61 tcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaa 160  Q
    |||||||||||||| || |||||  | || ||||  || |||||||| |||||||| ||||||||||||||||| ||||  |||||||||||||||||||    
T  7803689 tcaccacggatccttctcgccaatcgtatatcctcaggtataatagtgactcgcttagcatggatagcacacaatttagcatcctcaaagagaccaacaa 7803788  T
Q  161 gatatgcttcagcagcctcttgcaatgcaagcacagcatggctctggaaacga 213  Q
    | ||||  |||| || | | ||||||||||  |||||| ||||||||||||||    
T  7803789 ggtatgtctcagaagtcacctgcaatgcaaaaacagcacggctctggaaacga 7803841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 7813379 - 7813533
Alignment:
Q  61 tcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaa 160  Q
    |||||||||||| | |||||||| || || |||| ||| |||| ||| | || ||| ||||||||||||||||| ||||  ||||| |||||||||||||    
T  7813379 tcaccacggatcgttcttgccaattgtatatcctcgggtataacagtgattctcttagcatggatagcacacaatttagcatcctctaagagaccaacaa 7813478  T
Q  161 gatatgcttcagcagcctcttgcaatgcaagcacagcatggctctggaaacgaag 215  Q
    | | ||| |||| ||||  |||||||||||| ||||||   ||||||||||||||    
T  7813479 ggtgtgcctcagaagccatttgcaatgcaagaacagcaccactctggaaacgaag 7813533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 3929972 - 3930063
Alignment:
Q  91 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    ||||| |||||||||||||||| ||| ||||| || ||||| |  || || || ||||| | |||||||||||| ||||||||||| |||||    
T  3929972 tccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttg 3930063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 3930104 - 3930183
Alignment:
Q  335 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 414  Q
    ||||| |||||||| |||||||||||||| || |||||||| || ||||| || |  || ||||| ||||||||||||||    
T  3930104 ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatactt 3930183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 7803850 - 7803924
Alignment:
Q  334 cttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctg 408  Q
    ||||| || |||| |||||||||| |||||||| ||||| || |||||  | |||||||||| ||||||||||||    
T  7803850 cttgatgttctgaacaatttcacggaccaacctttggaaaggaagcttttttatcaagagcttagtactcttctg 7803924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 7813552 - 7813617
Alignment:
Q  343 ctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctg 408  Q
    |||| |||||||||| ||||||||||| || || |||||  | |||||||||| ||||||||||||    
T  7813552 ctgaacaatttcacggaccaacctctgaaaaggaagctttttcatcaagagcttagtactcttctg 7813617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 25865685 - 25865606
Alignment:
Q  335 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 414  Q
    ||||| |||||||||||||||||||| |  | ||||||||| ||||| | |||||| |||||||||||||||||||||||    
T  25865685 ttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatactt 25865606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 43479817 - 43479896
Alignment:
Q  335 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 414  Q
    ||||| |||||||| ||||| | |||||| || |||||||| ||||||||||| |  ||||| |||||||||||||||||    
T  43479817 ttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcggtactcttctgatactt 43479896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 41944064 - 41943943
Alignment:
Q  88 atgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttgcaatg 187  Q
    |||||||| |||||||| ||||| | ||| ||||| || |||||||| || || |||||||| |  ||||| ||||| ||||| || || || || | ||    
T  41944064 atgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtg 41943965  T
Q  188 caagcacagcatggctctggaa 209  Q
    |||| |||||||||||||||||    
T  41943964 caagaacagcatggctctggaa 41943943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 38799615 - 38799521
Alignment:
Q  88 atgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    |||||||| ||||| || ||||||| ||| ||||| || ||||| | ||| ||||| |||||||||||||| |  || ||||||||||| |||||    
T  38799615 atgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttg 38799521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 38821902 - 38821996
Alignment:
Q  88 atgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    |||||||| ||||| || ||||||| ||| ||||| || ||||| | ||| ||||| |||||||||||||| |  || ||||||||||| |||||    
T  38821902 atgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttg 38821996  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 9866662 - 9866759
Alignment:
Q  85 tggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    ||||||||||  |||||||||||||||| ||| ||||| |||||||| | |||||| || ||||| | ||||||||||||  ||| |||||| |||||    
T  9866662 tggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttg 9866759  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 13576333 - 13576254
Alignment:
Q  335 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 414  Q
    ||||| |||||||||||||| |||||||| || |||||||| |||||||| || |  ||||| || ||||||||||||||    
T  13576333 ttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatactt 13576254  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 13576465 - 13576374
Alignment:
Q  91 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    ||||| |||||||||||||| | ||| ||||| |||||||| |  || || |||||||| | |||||||||||| ||||||||||| |||||    
T  13576465 tccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttg 13576374  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 34571588 - 34571679
Alignment:
Q  334 cttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttccttatctcac 425  Q
    |||||| |||||||||||||||||||| |  | ||||||||| || || | |||||| || || ||||||||||||||||| | ||||||||    
T  34571588 cttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcac 34571679  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 604
Target Start/End: Original strand, 7594717 - 7594783
Alignment:
Q  538 accgaagagcaacagttccagggcggtaacgatgtggtttcttaaccccaccagtagtgggtgcaga 604  Q
    ||||||||||||| ||||||||||||||||| || |||||||| || ||||| ||||| || |||||    
T  7594717 accgaagagcaacggttccagggcggtaacggtgaggtttctttactccacctgtagtaggagcaga 7594783  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 7594399 - 7594495
Alignment:
Q  332 accttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatacttccttatctcactgt 428  Q
    |||||||| || |||||||||||||| || |  | ||| ||||| ||||| | |||||| ||||||||||||||||| ||||| |  ||||||||||    
T  7594399 accttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcactgt 7594495  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 31128 - 31037
Alignment:
Q  91 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 182  Q
    ||||| |||||||||||||||| ||| ||||| ||||| || |  || || || ||||| | |||||||||||| ||||||||||| |||||    
T  31128 tccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttg 31037  T

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